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ZIRC
ZFIN ID: ZDB-GENE-030131-2042
Gene Name: VPS35 retromer complex component
Gene Symbol: vps35
Sequence Ontology ID : SO:0000704

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Previous Names: si:rp71-34g2.3, wu:fa66e03, wu:fb95c08 (1), zgc:136268

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(Including Attributions)
Location: Chr: 7 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have protein transporter activity; predicted to be involved in intracellular protein transport and retrograde transport, endosome to Golgi; predicted to localize to the late endosome and  ...
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6907955]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7159390]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fcc403Gt Transgenic Insertion Unknown Splicing Variant DNA
sa9031 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa11695 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • sa15228 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40982 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH vps35 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    Parkinson's disease 17 {Parkinson disease 17} 614203
    DISEASE ASSOCIATED WITH vps35 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process protein transport (more)
    Cellular Component retromer, cargo-selective complex (more)
    Molecular Function obsolete protein transporter activity (more)
    GO Terms (all 7)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005378 (1)
  • InterPro:IPR016024 (1)
  • Pfam:PF03635 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA vps35-002 (1) 763
    vps35-004 (1) 646
    vps35-005 (1) 701
    mRNA vps35-201 (1) 3573
    vps35-203 (1) 752
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM vps35 No data available
    MARKER RELATIONSHIPS
    vps35Contained in: [BAC] RP71-34G2 (order this)
    vps35Encodes: [EST] fa66e03 (1), fb95c08, IMAGE:6907955 (1) (order this), IMAGE:7159390 (1) (order this)
    [cDNA] MGC:136268 (1) (order this), MGC:162844 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001025517 (1) 763bp
    Genomic GenBank:AL928906 (1) 161527bp
    Select Tool
    Polypeptide UniProtKB:Q6ZM34 (1) 831aa
    Sequence Clusters UniGene:72367 (1)
    Sequence Information (all 24)
    ORTHOLOGY for vps35 (Chr: 7)
    CITATIONS (23)