ZFIN Gene: elob

ZFIN ID: ZDB-GENE-020415-1

ZFIN ID: ZDB-GENE-020415-1

Gene Name:

elongin B

Gene Symbol:

elob Nomenclature History

Previous Names:

cb162 (1), tceb2 (1), wu:fb47e08

Gene Type:

protein_coding_gene

Location:

Chr: 3 Mapping Details/Browsers

Description:

Predicted to be involved in transcription elongation from RNA polymerase II promoter. Predicted to localize to VCB complex and elongin complex. Is expressed in several structures, including axis; mesoderm; notochord; retina; and solid lens vesicle. Orthologous to human ELOB (elongin B).

Genome Resources:

Alliance (1), Gene:192341 (1),

GENE EXPRESSION
Directly Submitted Expression Data:	6 figures (7 images) from Thisse et al., 2001 [cb162]
Wild-type Stages, Structures:	Gastrula:50%-epiboly (5.25h-5.66h) to Hatching:Long-pec (48.0h-60.0h)
	adaxial cell axial chorda mesoderm axis central nervous system mesoderm notochord retina retinal ganglion cell layer segmental plate solid lens vesicle somite
High Throughput Expression:	GEO (1)

MUTATIONS AND SEQUENCE TARGETING REAGENTS No data available

PHENOTYPE No data available

DISEASE ASSOCIATED WITH elob HUMAN ORTHOLOG No data available

DISEASE ASSOCIATED WITH elob VIA EXPERIMENTAL MODELS No data available

GENE ONTOLOGY

Ontology	GO Term
Biological Process	transcription elongation from RNA polymerase II promoter (more)
Cellular Component	elongin complex (more)

GO Terms (all 3)

PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available

TRANSCRIPTS
Type	Name	Length (nt)	Analysis
mRNA	elob (1 of many)-201 (1)	321	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	elob-201 (1)	1715	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
	elob-202 (1)	1756	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Browsers: NCBI

INTERACTIONS AND PATHWAYS

ANTIBODIES No data available

PLASMIDS No data available

CONSTRUCTS WITH SEQUENCES FROM elob No data available

MARKER RELATIONSHIPS

elob Contained in:	[BAC] DKEY-66I24 (1) (order this)
elob Encodes:	[EST] cb162 (1) (order this), fb47e08 (1)

SEQUENCE INFORMATION

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001142954 (1)	1763 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX004999 (1)	168839 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:A0A0R4IVB3 (1)	423 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Sequence Information (all 17)

ORTHOLOGY for elob ( Chr: 3 )

CITATIONS (12)

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