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ZIRC
ZFIN ID: ZDB-GENE-011207-1
Gene Name: SRY-box transcription factor 10
Gene Symbol: sox10
Sequence Ontology ID : SO:0001217

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Attributions

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Previous Names: sox10b (1), cls, colorless (1), colourless, golas (1), gos (1), zgc:100757

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(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have DNA-binding transcription activator activity, RNA polymerase II-specific. Involved in several processes, including inner ear development; iridophore differentiation; and nervous  ...
GENE EXPRESSION
All Expression Data: 233 figures from 152 publications
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
baz1 Point Mutation Unknown Missense ENU
m241 Unknown Unknown Unknown ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m618 Point Mutation Unknown Missense ENU
    sox10_unspecified Unspecified Unknown Unknown
    t3 Insertion Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tw2 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • tw11 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • utr13e1 Unknown Unknown Unknown
    Targeting reagents:
    PHENOTYPE
    Data: 63 figures from 29 publications
    Observed in:
    DISEASE ASSOCIATED WITH sox10 HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    PCWH syndrome PCWH syndrome 609136
    Waardenburg syndrome type 2E Waardenburg syndrome, type 2E, with or without neurologic involvement 611584
    Waardenburg syndrome type 4C Waardenburg syndrome, type 4C 613266
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process cranial skeletal system development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 27)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sox10-201 (1) 3205
     Withdrawn Transcriptsextinct
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDS No data available
    MARKER RELATIONSHIPS
    sox10 Contained in: [BAC] DKEY-201F15 (1) (order this)
    sox10 Encodes: [cDNA] MGC:100757 (1) (order this), MGC:195295 (1) (order this), MGC:195310 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131875 (1) 3231 bp
    Genomic GenBank:CU695115 (1) 47918 bp
    Select Tool
    Polypeptide UniProtKB:Q90XD1 (1) 485 aa
    Sequence Clusters UniGene:83682 (1)
    Sequence Information (all 24)
    ORTHOLOGY for sox10 ( Chr: 3 )
    CITATIONS (333)