ZFIN ID: ZDB-GENE-001207-1
Gene Name: SPT5 homolog, DSIF elongation factor subunit
Gene Symbol: supt5h
Sequence Ontology ID : SO:0000704

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Previous Names: Spt5, etID10129.15 (1), etID37101.15 (1), fb37g01, fb95e05, fog, foggy, wu:fb37g01 (1), wu:fb95e05 (1), wu:fc10f02

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(Including Attributions)
Location: Chr: 15 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 5 figures from 4 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:66413]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fh20 Point Mutation Unknown Cryptic Splice Site
la012689Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • m806 Point Mutation Unknown Missense ENU
    sa13309 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa42529 Point Mutation Unknown Splice Site ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sk8 Point Mutation Unknown Unknown
    Targeting reagents:
    PHENOTYPE
    Data: 16 figures from 8 publications
    Observed in:
    DISEASE ASSOCIATED WITH supt5h HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH supt5h VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription by RNA polymerase II (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 19)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR005100 (1)
  • InterPro:IPR005824 (1)
  • InterPro:IPR006645 (1)
  • InterPro:IPR008991 (1)
  • InterPro:IPR014722 (1)
  • InterPro:IPR017071 (1)
  • InterPro:IPR022581 (1)
  • InterPro:IPR024945 (1)
  • InterPro:IPR036735 (1)
  • InterPro:IPR039385 (1)
  • Pfam:PF00467 (1)
  • Pfam:PF03439 (1)
  • Pfam:PF11942 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA supt5h-001 (1) 3868
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM supt5h No data available
    MARKER RELATIONSHIPS
    supt5hContained in: [BAC] DKEY-46I14 (1) (order this)
    supt5hContains: [SNP] rs3728709 (1)
    supt5hEncodes: [EST] fb37g01 (1), fb95e05 (1), fc10f02
    [cDNA] MGC:66413 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131673 (1) 3816bp
    Genomic GenBank:CR626887 (1) 198090bp
    Select Tool
    Polypeptide UniProtKB:F1QD27 (1) 1084aa
    Sequence Clusters UniGene:33072 (1)
    Sequence Information (all 27)
    OTHER supt5h GENE PAGES
  • Alliance (1)
  • Gene:64275 (1)
  • VEGA:OTTDARG00000020682 (1)
  • ORTHOLOGY for supt5h (Chr: 15)
    CITATIONS (47)