ZFIN ID: ZDB-GENE-001103-2
Gene Name: SRY (sex determining region Y)-box 9b
Gene Symbol: sox9b
Sequence Ontology ID : SO:0000704

{{control.fieldName}} Edit

ID: {{control.nomenID}}
{{control.fieldName}}:
Reason:
Comments:

Attributions

{{pub.zdbID}}
Previous Names: fb18d01, wu:fb18d01 (1)

Add new Alias

Alias
Attribution

Attributions for Alias: {{control.newAlias}}

{{pub.zdbID}}

Delete Alias:

(Including Attributions)
Location: Chr: 3 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 88 figures from 64 publications
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2004 [MGC:76805]
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Adult (90d-730d, breeding adult)
  brain, central nervous system, ceratohyal cartilage chondroblast, chondrocranium cartilage (all 94) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
fh313 Point Mutation Unknown Premature Stop ENU
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa40193 Point Mutation Unknown Premature Stop ENU
    sox9b_unrecovered Point Mutation Unknown Unknown ENU
    sox9b_unspecified Unspecified Unknown Unknown
    Targeting reagents: MO1-sox9b (1), MO2-sox9b (1), MO3-sox9b (1), MO4-sox9b (1), MO5-sox9b (1) (all 7) expand
    PHENOTYPE
    Data: 20 figures from 8 publications
    Observed in: anatomical structure, atrioventricular valve formation, basal plate cartilage, bile canaliculus (all 55) expand
    DISEASE ASSOCIATED WITH sox9b HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    campomelic dysplasia Acampomelic campomelic dysplasia 114290
    Campomelic dysplasia 114290
    Campomelic dysplasia with autosomal sex reversal 114290
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process inner ear development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 21)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR022151 (1)
  • InterPro:IPR029548 (1)
  • InterPro:IPR036910 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • Pfam:PF12444 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sox9b-001 (1) 3419
    sox9b-002 (1) 864
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab2-sox9b (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sox9b
    tg(-.9sox9b:egfp), tg(-.56sox9b:egfp), tg(-1.8sox9b:egfp), tg(-1.88sox9b:egfp), tg(-2.4sox9b:egfp) (all 9) expand
    MARKER RELATIONSHIPS
    sox9bContained in: [Fosmid] CH1073-175H21 (1) (order this)
    sox9bEncodes: [EST] fb18d01 (1)
    [cDNA] MGC:76805 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131644 (1) 1916bp
    Genomic GenBank:CU855796 (1) 35870bp
    Select Tool
    Polypeptide UniProtKB:Q9DFH1 (1) 407aa
    Sequence Clusters UniGene:114501 (1)
    Sequence Information (all 24)
    OTHER sox9b GENE PAGES
  • Alliance (1)
  • Gene:60642 (1)
  • VEGA:OTTDARG00000035151 (1)
  • Ensembl(GRCz10):ENSDARG00000043923 (1)
  • ORTHOLOGY for sox9b (Chr: 3)
    CITATIONS (148)