ZFIN ID: ZDB-GENE-001103-1
Gene Name: SRY (sex determining region Y)-box 9a
Gene Symbol: sox9a
Sequence Ontology ID : SO:0000704

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Previous Names: jef (1), jellyfish, wu:fj17b12, zgc:111921

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(Including Attributions)
Location: Chr: 12 Mapping Details/Browsers
Nomenclature History
GENE EXPRESSION
All Expression Data: 139 figures from 106 publications
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Adult (90d-730d, breeding adult)
  anal fin, anal fin pterygiophore, anatomical structure, brain (all 121) expand
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
hi1134Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sox9a_unspecified Unspecified Unknown Unknown
    tw37 Point Mutation Unknown Unknown ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • zc81Tg Transgenic Insertion Unknown Unknown DNA
    Targeting reagents: MO1-sox9a (1), MO2-sox9a (1), MO3-sox9a (1), MO4-sox9a (1), MO5-sox9a (1) (all 7) expand
    PHENOTYPE
    Data: 17 figures from 10 publications
    Observed in: basal plate cartilage, basihyal cartilage, cartilage development, ceratobranchial 5 bone (all 38) expand
    DISEASE ASSOCIATED WITH sox9a HUMAN ORTHOLOG
    Disease Ontology Term OMIM Term OMIM Phenotype ID
    campomelic dysplasia Acampomelic campomelic dysplasia 114290
    Campomelic dysplasia 114290
    Campomelic dysplasia with autosomal sex reversal 114290
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process inner ear development (more)
    Cellular Component cytoplasm (more)
    Molecular Function chromatin binding (more)
    GO Terms (all 16)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR009071 (1)
  • InterPro:IPR022151 (1)
  • InterPro:IPR029548 (1)
  • InterPro:IPR036910 (1)
  • PROSITE:PS50118 (1)
  • Pfam:PF00505 (1)
  • Pfam:PF12444 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA sox9a-001 (1) 1784
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Ab2-sox9 (1)
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM sox9a
    Tg(-2.4shha-E1:GFP)
    MARKER RELATIONSHIPS
    sox9aContained in: [BAC] CH73-314D5 (1) (order this)
    sox9aEncodes: [EST] fj17b12
    [cDNA] MGC:111921 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131643 (1) 1790bp
    Genomic GenBank:CU074420 (1) 97020bp
    Select Tool
    Polypeptide UniProtKB:Q9DFH2 (1) 462aa
    Sequence Clusters UniGene:80814 (1)
    Sequence Information (all 24)
    OTHER sox9a GENE PAGES
  • Alliance (1)
  • Gene:60641 (1)
  • VEGA:OTTDARG00000035590 (1)
  • Ensembl(GRCz10):ENSDARG00000003293 (1)
  • ORTHOLOGY for sox9a (Chr: 12)
    CITATIONS (219)