ZFIN Fish: sox9a^tw37/tw37

ZFIN ID: ZDB-FISH-150901-16993

ZFIN ID: ZDB-FISH-150901-16993

Fish name:	sox9a^tw37/tw37
Genotype:	sox9a^tw37/tw37
Targeting Reagent:	none

HUMAN DISEASE MODELED by sox9a^tw37/tw37
No data available

GENE EXPRESSION
Gene expression in sox9a^tw37/tw37

RNA expression

Expressed Gene	Structure	Conditions	Figures
calb2a	retinal ganglion cell layer retinal inner nuclear layer	standard conditions	Fig. 5 from Yokoi et al., 2009
calb2b	retinal ganglion cell layer retinal inner nuclear layer	standard conditions	Fig. 5 from Yokoi et al., 2009
col2a1a	iris otic vesicle pectoral fin pharyngeal arch 1 pharyngeal arch 2 (not) scapulocoracoid	standard conditions	Fig. 5 from Yokoi et al., 2009 Fig. 7 from Yan et al., 2002
col11a2	(not) chondrocranium cartilage opercle otic vesicle pectoral fin bud (not) pharyngeal arch cartilage	standard conditions	Fig. 1 from Yokoi et al., 2009
crx	retinal inner nuclear layer retinal outer nuclear layer	standard conditions	Fig. 5 from Yokoi et al., 2009
dlx2a	diencephalon pharyngeal arch telencephalon	standard conditions	Fig. 6 from Yan et al., 2002
foxc1a	pharyngeal arch 1 pharyngeal arch 2	standard conditions	Fig. S6 from Xu et al., 2018
neurod1	retinal inner nuclear layer retinal outer nuclear layer	standard conditions	Fig. 5 from Yokoi et al., 2009
rs1a	retinal inner nuclear layer	standard conditions	Fig. 5 from Yokoi et al., 2009
sox4a	retinal ganglion cell layer retinal inner nuclear layer	standard conditions	Fig. 5 from Yokoi et al., 2009
sox9a	(not) forebrain neurogenic placode nucleus pectoral fin pharyngeal arch (not) scapulocoracoid	standard conditions	Fig. 5 , Fig. 6 , Fig. 7 from Yan et al., 2002
ttn.2	adductor mandibulae hyohyoideus interhyoideus sternohyoid ventral intermandibularis anterior ventral intermandibularis posterior	standard conditions	Fig. 9 from Yan et al., 2002
vsx1	retinal inner nuclear layer	standard conditions	Fig. 5 from Yokoi et al., 2009

Protein expression

Antibody	Antigen Genes	Structure	Conditions	Figures
zpr-3		photoreceptor cell	standard conditions	Fig. 6 from Yokoi et al., 2009
Ab1-GABA		amacrine cell	standard conditions	Fig. 6 from Yokoi et al., 2009

Reporter gene expression No data available

PHENOTYPE
Phenotype in sox9a^tw37/tw37

Phenotype	Conditions	Figures
cartilage development disrupted, abnormal	standard conditions	Fig. 1 from Yan et al., 2002 Fig. 7 from Piotrowski et al., 1996
ceratobranchial bone aplastic, abnormal	standard conditions	Fig. 1 from Yan et al., 2002
ceratohyal cartilage decreased size, abnormal	standard conditions	Fig. 1 from Yan et al., 2002 Fig. 7 from Piotrowski et al., 1996
cleithrum present, normal	standard conditions	Fig. 1 from Yan et al., 2002 Fig. 7 from Piotrowski et al., 1996
coracoid absent, abnormal	standard conditions	Fig. 7 from Piotrowski et al., 1996
hyosymplectic cartilage aplastic, abnormal	standard conditions	Fig. 1 from Yan et al., 2002
mandibular arch skeleton morphology, abnormal	standard conditions	Table 1 from van Eeden et al., 1996
Meckel's cartilage decreased size, abnormal	standard conditions	Fig. 1 from Yan et al., 2002 Fig. 7 from Piotrowski et al., 1996
neurocranium absent, abnormal	standard conditions	Fig. 7 from Piotrowski et al., 1996
palatoquadrate arch quality, abnormal	standard conditions	Fig. for (tw37) from Phenotype Annotation (1994-2006)
palatoquadrate cartilage aplastic, abnormal	standard conditions	Fig. 1 from Yan et al., 2002
palatoquadrate cartilage decreased size, abnormal	standard conditions	Fig. 7 from Piotrowski et al., 1996
parasphenoid present, normal	standard conditions	Fig. 7 from Piotrowski et al., 1996
pectoral fin decreased length, abnormal	standard conditions	Fig. 7 from Piotrowski et al., 1996 Table 1 from van Eeden et al., 1996
pectoral fin decreased size, abnormal	standard conditions	Table 1, Table 2, text only from van Eeden et al., 1996
pectoral fin endoskeletal disc present, normal	standard conditions	Fig. 1 from Yan et al., 2002
pharyngeal arch 3-7 decreased size, abnormal	standard conditions	text only from van Eeden et al., 1996
pharyngeal arch 3-7 skeleton quality, abnormal	standard conditions	Fig. for (tw37) from Phenotype Annotation (1994-2006)
pharyngeal arch cartilage absent, abnormal	standard conditions	Fig. 7 from Piotrowski et al., 1996
scapulocoracoid aplastic, abnormal	standard conditions	Fig. 1 from Yan et al., 2002
whole organism decreased length, abnormal	standard conditions	Fig. for (tw37) from Phenotype Annotation (1994-2006) Fig. 7 from Piotrowski et al., 1996
whole organism lethal (sensu genetics), abnormal	standard conditions	Fig. for (tw37) from Phenotype Annotation (1994-2006) Fig. 7 from Piotrowski et al., 1996

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