ZFIN ID: ZDB-GENE-000823-6
Gene Name: homeobox B5b
Gene Symbol: hoxb5b
Sequence Ontology ID : SO:0000704

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Previous Names: hoxa5, hoxzf54, etID309875.12 (1), hoxb5-like, id:ibd2566 (1), z-2, ZF-54, zgc:101134

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(Including Attributions)
Location: Chr: 12 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Predicted to have RNA polymerase II distal enhancer sequence-specific DNA binding activity, proximal promoter DNA-binding activity transcription activator activity, RNA polymerase II-specific, and  ...
GENE EXPRESSION
All Expression Data: 14 figures from 11 publications
Directly Submitted Expression Data: 2 figures (4 images) from Kudoh et al., 2001 [ibd2566]
Wild-type Stages, Structures: Gastrula:Bud (10.0h-10.33h) to Larval:Protruding-mouth (72.0h-96.0h, 3.5mm)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa42041 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE
    Data: Fig. 6 from Waxman et al., 2008
    Observed in:
    DISEASE ASSOCIATED WITH hoxb5b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxb5b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process heart development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 10)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR001827 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR017995 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS00032 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxb5b-201 (1) 1626
    ottdart00000001797 (1) 1356
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM hoxb5b No data available
    MARKER RELATIONSHIPS
    hoxb5bContained in: [BAC] DKEY-11C5 (1) (order this)
    [PAC] BUSM1-227H09 (2) (order this)
    hoxb5bEncodes: [EST] ibd2566 (1) (order this)
    [cDNA] MGC:101134 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131537 (1) 1660bp
    Genomic GenBank:BX001014 (1) 193523bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4I9D0 (1) 276aa
    Sequence Clusters UniGene:75783 (1)
    Sequence Information (all 22)
    OTHER hoxb5b GENE PAGES
  • Alliance (1)
  • Gene:58052 (1)
  • VEGA:OTTDARG00000001683 (1)
  • VEGA:OTTDARG00000020589 (1)
  • ORTHOLOGY for hoxb5b (Chr: 12)
    CITATIONS (58)