hoxa9b

ID

ZDB-GENE-000823-2

Name

homeobox A9b

Symbol

hoxa9b Nomenclature History

Previous Names

Hoxa-9
zgc:110504

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Genome Assembly

GRCz12tu

Annotation Status

Current

Description

Predicted to enable DNA-binding transcription factor activity and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in embryonic skeletal system morphogenesis; regionalization; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within DNA-templated transcription and regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; chondroblast; mesenchyme; pectoral fin bud; and pectoral fin field. Orthologous to human HOXA9 (homeobox A9).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

14 figures from 11 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With hoxa9b Human Ortholog

No data available

Associated With hoxa9b Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR017970	Homeobox, conserved site
Domain	IPR001356	Homeodomain
Domain	IPR006711	Hox9, N-terminal activation domain
Domain	IPR020479	Homeodomain, metazoa
Family	IPR017112	Homeobox protein HXA9/HXB9/HXC9
Family	IPR050803	Abd-B homeobox transcription factor
Homologous_superfamily	IPR009057	Homedomain-like superfamily