ZFIN ID: ZDB-GENE-000823-1
Gene Name: homeobox A9a
Gene Symbol: hoxa9a
Sequence Ontology ID : SO:0000704

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Previous Names: hoxx9, fd07f09 (1), wu:fd07f09 (1), z-10, zgc:110505

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(Including Attributions)
Location: Chr: 19 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
GENE EXPRESSION
All Expression Data: 27 figures from 17 publications
Directly Submitted Expression Data: 6 figures (10 images) from Thisse et al., 2004 [IMAGE:6898223]
Wild-type Stages, Structures: Gastrula:50%-epiboly (5.25h-5.66h) to Larval:Day 5 (120.0h-144.0h, 3.9mm, 6 teeth)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la028009Tg Transgenic Insertion Unknown Unknown DNA
sa18147 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Targeting reagents:
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxa9a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxa9a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001356 (1)
  • InterPro:IPR006711 (1)
  • InterPro:IPR009057 (1)
  • InterPro:IPR017112 (1)
  • InterPro:IPR017970 (1)
  • InterPro:IPR020479 (1)
  • PROSITE:PS00027 (1)
  • PROSITE:PS50071 (1)
  • Pfam:PF00046 (1)
  • Pfam:PF04617 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA hoxa9a-001 (1) 1752
    hoxa9a-002 (1) 926
    ottdart00000058142 (1) 498
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIESNo data available
    PLASMIDS
    Addgene
    CONSTRUCTS WITH SEQUENCES FROM hoxa9a No data available
    MARKER RELATIONSHIPS
    hoxa9aContained in: [BAC] DKEY-25E11 (1) (order this)
    hoxa9aEncodes: [EST] fd07f09, IMAGE:6898223 (1) (order this)
    [cDNA] MGC:110505 (1) (order this), MGC:192530 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_131532 (1) 1770bp
    Genomic GenBank:CR382300 (1) 202006bp Blast at MegaBLAST
    Polypeptide UniProtKB:B2GSB0 (1) 250aa
    Sequence Clusters UniGene:5730 (1)
    Sequence Information (all 25)
    OTHER hoxa9a GENE PAGES
  • Alliance (1)
  • Gene:58047 (1)
  • VEGA:OTTDARG00000015150 (1)
  • VEGA:OTTDARG00000040489 (1)
  • Ensembl(GRCz11):ENSDARG00000105013 (1)
  • ORTHOLOGY for hoxa9a (Chr: 19)
    CITATIONS (70)