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ZIRC
ZFIN ID: ZDB-GENE-000629-3
Gene Name: Y box binding protein 1
Gene Symbol: ybx1
Sequence Ontology ID : SO:0000704

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Previous Names: yb1, hm:zeh0308, nsep1 (1), wu:fb01g10 (1), wu:fb08c05 (1), wu:fb16e10, wu:fj26c09 (1), Y-box binding protein 1, zfY1 (1), zgc:85599

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(Including Attributions)
Location: Chr: 8 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Exhibits RNA binding activity and eukaryotic initiation factor 4E binding activity; involved in several processes, including establishment of RNA localization, establishment of RNA localization, and  ...
GENE EXPRESSION
All Expression Data: 8 figures from 5 publications
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [MGC:55205]
  1 figure (1 image) from Rauch et al., 2003 [fb16e10]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Adult (90d-730d, breeding adult)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa42 Point Mutation Unknown Missense ENU
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21381 Point Mutation Unknown Splice Site ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa21382 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa34489 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sg8 Small Deletion Exon 5 Frameshift, Premature Stop ZINC_FINGER_NUCLEASE
    tsu3d5i Indel Unknown Unknown CRISPR
    tsu27 Indel Exon 1 Unknown CRISPR
  • China Zebrafish Resource Center (CZRC, ZKO consortium) (order this)
  • Targeting reagents:
    DISEASE ASSOCIATED WITH ybx1 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ybx1 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process establishment of RNA localization (more)
    Cellular Component nucleus (more)
    Molecular Function eukaryotic initiation factor 4E binding (more)
    GO Terms (all 9)
    TRANSCRIPTS
    Type Name Length (bp) Analysis
    ncRNA ybx1-002 (1) 762
    ybx1-003 (1) 686
    mRNA ybx1-201 (1) 1515
    GENE PRODUCT DESCRIPTION No description available
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM ybx1
    MARKER RELATIONSHIPS
    ybx1Contained in: [BAC] DKEYP-100A1 (1)
    ybx1Encodes: [EST] fb01g10 (1), fb08c05 (1), fb16e10 (1) (order this), fj26c09 (1), zeh0308
    [cDNA] MGC:55205 (1) (order this), MGC:85599 (1) (order this), MGC:158477 (1) (order this), MGC:174067 (1) (order this), MGC:174962 (1) (order this), MGC:175087 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001126457 (1) 1515bp
    Genomic GenBank:CR792439 (1) 170028bp
    Select Tool
    Polypeptide UniProtKB:B5DE31 (1) 310aa
    Sequence Clusters UniGene:59019 (1)
    Sequence Information (all 44)
    ORTHOLOGY for ybx1 (Chr: 8)
    CITATIONS (39)