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ZFIN ID:
ZDB-GENE-040513-7
CITATIONS
(71 total)
Gene Name:
cadherin-related 23
Gene Symbol:
cdh23
Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
Beis, D., and Stainier, D.Y. (2006) In vivo cell biology: following the zebrafish trend. Trends in cell biology. 16(2):105-112
Blanco-Sánchez, B., Clément, A., Fierro, J., Washbourne, P., Westerfield, M. (2014) Complexes of Usher proteins preassemble at the endoplasmic reticulum and are required for trafficking and ER homeostasis. Disease models & mechanisms. 7:547-59
Chen, Z., Chou, S.W., McDermott, B.M. (2017) Ribeye protein is intrinsically dynamic but is stabilized in the context of the ribbon synapse. The Journal of physiology. 596(3):409-421
Chou, S.W., Chen, Z., Zhu, S., Davis, R.W., Hu, J., Liu, L., Fernando, C.A., Kindig, K., Brown, W.C., Stepanyan, R., McDermott, B.M. (2017) A molecular basis for water motion detection by the mechanosensory lateral line of zebrafish. Nature communications. 8:2234
Einhorn, Z., Trapani, J.G., Liu, Q., and Nicolson, T. (2012) Rabconnectin3alpha promotes stable activity of the H+ pump on synaptic vesicles in hair cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(32):11144-11156
Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
Erickson, T., Pacentine, I.V., Venuto, A., Clemens, R., Nicolson, T. (2020) The
lhfpl5
Ohnologs
lhfpl5a
and
lhfpl
5b Are Required for Mechanotransduction in Distinct Populations of Sensory Hair Cells in Zebrafish. Frontiers in molecular neuroscience. 12:320
Faucherre, A., Baudoin, J.P., Pujol-Martí, J., and Lopez-Schier, H. (2010) Multispectral four-dimensional imaging reveals that evoked activity modulates peripheral arborization and the selection of plane-polarized targets by sensory neurons. Development (Cambridge, England). 137(10):1635-1643
Glover, G., Mueller, K.P., Söllner, C., Neuhauss, S.C., and Nicolson, T. (2012) The Usher gene cadherin 23 is expressed in the zebrafish brain and a subset of retinal amacrine cells. Molecular Vision. 18:2309-2322
Gopal, S.R., Chen, D.H., Chou, S.W., Zang, J., Neuhauss, S.C., Stepanyan, R., McDermott, B.M., Alagramam, K.N. (2015) Zebrafish Models for the Mechanosensory Hair Cell Dysfunction in Usher Syndrome 3 Reveal That Clarin-1 Is an Essential Hair Bundle Protein. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35:10188-201
Gorski, M., Tin, A., Garnaas, M., McMahon, G.M., Chu, A.Y., Tayo, B.O., Pattaro, C., Teumer, A., Chasman, D.I., Chalmers, J., Hamet, P., Tremblay, J., Woodward, M., Aspelund, T., Eiriksdottir, G., Gudnason, V., Harris, T.B., Launer, L.J., Smith, A.V., Mitchell, B.D., O'Connell, J.R., Shuldiner, A.R., Coresh, J., Li, M., Freudenberger, P., Hofer, E., Schmidt, H., Schmidt, R., Holliday, E.G., Mitchell, P., Wang, J.J., de Boer, I.H., Li, G., Siscovick, D.S., Kutalik, Z., Corre, T., Vollenweider, P., Waeber, G., Gupta, J., Kanetsky, P.A., Hwang, S.J., Olden, M., Yang, Q., de Andrade, M., Atkinson, E.J., Kardia, S.L., Turner, S.T., Stafford, J.M., Ding, J., Liu, Y., Barlassina, C., Cusi, D., Salvi, E., Staessen, J.A., Ridker, P.M., Grallert, H., Meisinger, C., Müller-Nurasyid, M., Krämer, B.K., Kramer, H., Rosas, S.E., Nolte, I.M., Penninx, B.W., Snieder, H., Fabiola Del Greco, M., Franke, A., Nöthlings, U., Lieb, W., Bakker, S.J., Gansevoort, R.T., van der Harst, P., Dehghan, A., Franco, O.H., Hofman, A., Rivadeneira, F., Sedaghat, S., Uitterlinden, A.G., Coassin, S., Haun, M., Kollerits, B., Kronenberg, F., Paulweber, B., Aumann, N., Endlich, K., Pietzner, M., Völker, U., Rettig, R., Chouraki, V., Helmer, C., Lambert, J.C., Metzger, M., Stengel, B., Lehtimäki, T., Lyytikäinen, L.P., Raitakari, O., Johnson, A., Parsa, A., Bochud, M., Heid, I.M., Goessling, W., Köttgen, A., Kao, W.H., Fox, C.S., Böger, C.A. (2015) Genome-wide association study of kidney function decline in individuals of European descent. Kidney International. 87(5):1017-29
Granato, M., van Eeden, F.J., Schach, U., Trowe, T., Brand, M., Furutani-Seiki, M., Haffter, P., Hammerschmidt, M., Heisenberg, C.P., Jiang, Y.J., Kane, D.A., Kelsh, R.N., Mullins, M.C., Odenthal, J., and Nüsslein-Volhard, C. (1996) Genes controlling and mediating locomotion behavior of the zebrafish embryo and larva. Development (Cambridge, England). 123:399-413
Hailey, D.W., Esterberg, R., Linbo, T.H., Rubel, E.W., Raible, D.W. (2017) Fluorescent aminoglycosides reveal intracellular trafficking routes in mechanosensory hair cells. The Journal of Clinical Investigation. 127(2):472-486
Hailey, D.W., Roberts, B., Owens, K.N., Stewart, A.K., Linbo, T., Pujol, R., Alper, S.L., Rubel, E.W., and Raible, D.W. (2012) Loss of Slc4a1b Chloride/Bicarbonate Exchanger Function Protects Mechanosensory Hair Cells from Aminoglycoside Damage in the Zebrafish Mutant persephone. PLoS Genetics. 8(10):e1002971
Kindt, K.S., Finch, G., and Nicolson, T. (2012) Kinocilia mediate mechanosensitivity in developing zebrafish hair cells. Developmental Cell. 23(2):329-341
Maeda, R., Kindt, K.S., Mo, W., Morgan, C.P., Erickson, T., Zhao, H., Clemens-Grisham, R., Barr-Gillespie, P.G., Nicolson, T. (2014) Tip-link protein protocadherin 15 interacts with transmembrane channel-like proteins TMC1 and TMC2. Proceedings of the National Academy of Sciences of the United States of America. 111(35):12907-12
Maeda, R., Pacentine, I.V., Erickson, T., Nicolson, T. (2017) Functional analysis of the transmembrane and cytoplasmic domains of Pcdh15a in zebrafish hair cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37(12):3231-3245
McQuate, A., Knecht, S., Raible, D.W. (2023) Activity regulates a cell type-specific mitochondrial phenotype in zebrafish lateral line hair cells. eLIFE. 12:
Mo, W., and Nicolson, T. (2011) Both pre- and postsynaptic activity of nsf prevents degeneration of hair-cell synapses. PLoS One. 6(11):e27146
Mo, W., Chen, F., Nechiporuk, A., and Nicolson, T. (2010) Quantification of vestibular-induced eye movements in zebrafish larvae. BMC Neuroscience. 11:110
Nicolson, T. (2005) The genetics of hearing and balance in zebrafish. Annual review of genetics. 39:9-22
Nicolson, T., Rüsch, A., Friedrich, R.W., Granato, M., Ruppersberg, J.P., and Nüsslein-Volhard, C. (1998) Genetic analysis of vertebrate sensory hair cell mechanosensation: the zebrafish circler mutants. Neuron. 20:271-283
Obholzer, N., Swinburne, I.A., Schwab, E., Nechiporuk, A.V., Nicolson, T., and Megason, S.G. (2012) Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing. Development (Cambridge, England). 139(22):4280-4290
Obholzer, N., Wolfson, S., Trapani, J.G., Mo, W., Nechiporuk, A., Busch-Nentwich, E., Seiler, C., Sidi, S., Söllner, C., Duncan, R.N., Boehland, A., and Nicolson, T. (2008) Vesicular glutamate transporter 3 is required for synaptic transmission in zebrafish hair cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 28(9):2110-2118
Phillips, J.B., Blanco-Sanchez, B., Lentz, J.J., Tallafuss, A., Khanobdee, K., Sampath, S., Jacobs, Z.G., Han, P.F., Mishra, M., Williams, D.S., Keats, B.J., Washbourne, P., and Westerfield, M. (2011) Harmonin (Ush1c) is required in zebrafish Muller glial cells for photoreceptor synaptic development and function. Disease models & mechanisms. 4(6):786-800
Pickett, S.B., Thomas, E.D., Sebe, J.Y., Linbo, T., Esterberg, R., Hailey, D.W., Raible, D.W. (2018) Cumulative mitochondrial activity correlates with ototoxin susceptibility in zebrafish mechanosensory hair cells. eLIFE. 7:
Samarut, E., Gaudin, C., Hughes, S., Gillet, B., de Bernard, S., Jouve, P.E., Buffat, L., Allot, A., Lecompte, O., Berekelya, L., Rochette-Egly, C., and Laudet, V. (2014) Retinoic acid receptor subtype-specific transcriptotypes in the early zebrafish embryo. Molecular endocrinology (Baltimore, Md.). 28(2):260-272
Schmid, C., Alampi, I., Briggs, J., Tarcza, K., Stawicki, T.M. (2020) Mechanotransduction Activity Facilitates Hair Cell Toxicity Caused by the Heavy Metal Cadmium. Frontiers in Cellular Neuroscience. 14:37
Seiler, C. and Nicolson, T. (1999) Defective calmodulin-dependent rapid apical endocytosis in zebrafish sensory hair cell mutants. Journal of neurobiology. 41(3):424-434
Shi, T., Beaulieu, M.O., Saunders, L.M., Fabian, P., Trapnell, C., Segil, N., Crump, J.G., Raible, D.W. (2023) Single-cell transcriptomic profiling of the zebrafish inner ear reveals molecularly distinct hair cell and supporting cell subtypes. eLIFE. 12:
Steinke, D., Salzburger, W., Braasch, I., and Meyer, A. (2006) Many genes in fish have species-specific asymmetric rates of molecular evolution. BMC Genomics. 7(1):20
Suli, A., Pujol, R., Cunningham, D.E., Hailey, D.W., Prendergast, A., Rubel, E.W., Raible, D.W. (2016) Innervation regulates synaptic ribbons in lateral line mechanosensory hair cells. Journal of Cell Science. 129(11):2250-60
Söllner, C., Rauch, G-J., Siemens, J., Geisler, R., Schuster, S.C., The Tübingen 2000 Screen Consortium, Müller, U., and Nicolson, T. (2004) Mutations in cadherin 23 affect tip links in zebrafish sensory hair cells. Nature. 428(6986):955-959
Thomas, A.J., Hailey, D.W., Stawicki, T.M., Wu, P., Coffin, A.B., Rubel, E.W., Raible, D.W., Simon, J.A., and Ou, H.C. (2013) Functional mechanotransduction is required for Cisplatin-induced hair cell death in the zebrafish lateral line. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(10):4405-4414
Toro, C., Trapani, J.G., Pacentine, I., Maeda, R., Sheets, L., Mo, W., Nicolson, T. (2015) Dopamine Modulates the Activity of Sensory Hair Cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35(50):16494-16503
Trapani, J.G., and Nicolson, T. (2011) Mechanism of spontaneous activity in afferent neurons of the zebrafish lateral-line organ. The Journal of neuroscience : the official journal of the Society for Neuroscience. 31(5):1614-1623
Trapani, J.G., Obholzer, N., Mo, W., Brockerhoff, S.E., and Nicolson, T. (2009) Synaptojanin1 is required for temporal fidelity of synaptic transmission in hair cells. PLoS Genetics. 5(5):e1000480
Vargo, J.W., Walker, S.N., Gopal, S.R., Deshmukh, A.R., McDermott, B.M., Alagramam, K.N., Stepanyan, R. (2017) Inhibition of Mitochondrial Division Attenuates Cisplatin-Induced Toxicity in the Neuromast Hair Cells. Frontiers in Cellular Neuroscience. 11:393
Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
Varshney, G.K., Pei, W., LaFave, M.C., Idol, J., Xu, L., Gallardo, V., Carrington, B., Bishop, K., Jones, M., Li, M., Harper, U., Huang, S.C., Prakash, A., Chen, W., Sood, R., Ledin, J., Burgess, S.M. (2015) High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome research. 25(7):1030-42
Wang, D., Jao, L.E., Zheng, N., Dolan, K., Ivey, J., Zonies, S., Wu, X., Wu, K., Yang, H., Meng, Q., Zhu, Z., Zhang, B., Lin, S., and Burgess, S.M. (2007) Efficient genome-wide mutagenesis of zebrafish genes by retroviral insertions. Proceedings of the National Academy of Sciences of the United States of America. 104(30):12428-12433
Whitfield, T.T. (2002) Zebrafish as a model for hearing and deafness. Journal of neurobiology. 53(2):157-171
Yang, S., Xie, B.L., Dong, X.P., Wang, L.X., Zhu, G.H., Wang, T., Wu, W.J., Lai, R.S., Tao, R., Guan, M.X., Chen, F.Y., Tan, D.H., Deng, Z., Xie, H.P., Zeng, Y., Xiao, Z.A., Xie, D.H. (2023) cdh23 affects congenital hearing loss through regulating purine metabolism. Frontiers in molecular neuroscience. 16:10795291079529
Zhang, Y., Wang, Y., Yao, X., Wang, C., Chen, F., Liu, D., Shao, M., Xu, Z. (2020) Rbm24a Is Necessary for Hair Cell Development Through Regulating mRNA Stability in Zebrafish. Frontiers in cell and developmental biology. 8:604026
McQuate, A., Knecht, S., Raible, D.W. (2023) Activity regulates a cell type-specific mitochondrial phenotype in zebrafish lateral line hair cells. eLIFE. 12:
Shi, T., Beaulieu, M.O., Saunders, L.M., Fabian, P., Trapnell, C., Segil, N., Crump, J.G., Raible, D.W. (2023) Single-cell transcriptomic profiling of the zebrafish inner ear reveals molecularly distinct hair cell and supporting cell subtypes. eLIFE. 12:
Yang, S., Xie, B.L., Dong, X.P., Wang, L.X., Zhu, G.H., Wang, T., Wu, W.J., Lai, R.S., Tao, R., Guan, M.X., Chen, F.Y., Tan, D.H., Deng, Z., Xie, H.P., Zeng, Y., Xiao, Z.A., Xie, D.H. (2023) cdh23 affects congenital hearing loss through regulating purine metabolism. Frontiers in molecular neuroscience. 16:10795291079529
Erickson, T., Pacentine, I.V., Venuto, A., Clemens, R., Nicolson, T. (2020) The
lhfpl5
Ohnologs
lhfpl5a
and
lhfpl
5b Are Required for Mechanotransduction in Distinct Populations of Sensory Hair Cells in Zebrafish. Frontiers in molecular neuroscience. 12:320
Schmid, C., Alampi, I., Briggs, J., Tarcza, K., Stawicki, T.M. (2020) Mechanotransduction Activity Facilitates Hair Cell Toxicity Caused by the Heavy Metal Cadmium. Frontiers in Cellular Neuroscience. 14:37
Zhang, Y., Wang, Y., Yao, X., Wang, C., Chen, F., Liu, D., Shao, M., Xu, Z. (2020) Rbm24a Is Necessary for Hair Cell Development Through Regulating mRNA Stability in Zebrafish. Frontiers in cell and developmental biology. 8:604026
Pickett, S.B., Thomas, E.D., Sebe, J.Y., Linbo, T., Esterberg, R., Hailey, D.W., Raible, D.W. (2018) Cumulative mitochondrial activity correlates with ototoxin susceptibility in zebrafish mechanosensory hair cells. eLIFE. 7:
Bayés, À., Collins, M.O., Reig-Viader, R., Gou, G., Goulding, D., Izquierdo, A., Choudhary, J.S., Emes, R.D., Grant, S.G. (2017) Evolution of complexity in the zebrafish synapse proteome. Nature communications. 8:14613
Chen, Z., Chou, S.W., McDermott, B.M. (2017) Ribeye protein is intrinsically dynamic but is stabilized in the context of the ribbon synapse. The Journal of physiology. 596(3):409-421
Chou, S.W., Chen, Z., Zhu, S., Davis, R.W., Hu, J., Liu, L., Fernando, C.A., Kindig, K., Brown, W.C., Stepanyan, R., McDermott, B.M. (2017) A molecular basis for water motion detection by the mechanosensory lateral line of zebrafish. Nature communications. 8:2234
Hailey, D.W., Esterberg, R., Linbo, T.H., Rubel, E.W., Raible, D.W. (2017) Fluorescent aminoglycosides reveal intracellular trafficking routes in mechanosensory hair cells. The Journal of Clinical Investigation. 127(2):472-486
Maeda, R., Pacentine, I.V., Erickson, T., Nicolson, T. (2017) Functional analysis of the transmembrane and cytoplasmic domains of Pcdh15a in zebrafish hair cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 37(12):3231-3245
Vargo, J.W., Walker, S.N., Gopal, S.R., Deshmukh, A.R., McDermott, B.M., Alagramam, K.N., Stepanyan, R. (2017) Inhibition of Mitochondrial Division Attenuates Cisplatin-Induced Toxicity in the Neuromast Hair Cells. Frontiers in Cellular Neuroscience. 11:393
Suli, A., Pujol, R., Cunningham, D.E., Hailey, D.W., Prendergast, A., Rubel, E.W., Raible, D.W. (2016) Innervation regulates synaptic ribbons in lateral line mechanosensory hair cells. Journal of Cell Science. 129(11):2250-60
Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
Gopal, S.R., Chen, D.H., Chou, S.W., Zang, J., Neuhauss, S.C., Stepanyan, R., McDermott, B.M., Alagramam, K.N. (2015) Zebrafish Models for the Mechanosensory Hair Cell Dysfunction in Usher Syndrome 3 Reveal That Clarin-1 Is an Essential Hair Bundle Protein. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35:10188-201
Gorski, M., Tin, A., Garnaas, M., McMahon, G.M., Chu, A.Y., Tayo, B.O., Pattaro, C., Teumer, A., Chasman, D.I., Chalmers, J., Hamet, P., Tremblay, J., Woodward, M., Aspelund, T., Eiriksdottir, G., Gudnason, V., Harris, T.B., Launer, L.J., Smith, A.V., Mitchell, B.D., O'Connell, J.R., Shuldiner, A.R., Coresh, J., Li, M., Freudenberger, P., Hofer, E., Schmidt, H., Schmidt, R., Holliday, E.G., Mitchell, P., Wang, J.J., de Boer, I.H., Li, G., Siscovick, D.S., Kutalik, Z., Corre, T., Vollenweider, P., Waeber, G., Gupta, J., Kanetsky, P.A., Hwang, S.J., Olden, M., Yang, Q., de Andrade, M., Atkinson, E.J., Kardia, S.L., Turner, S.T., Stafford, J.M., Ding, J., Liu, Y., Barlassina, C., Cusi, D., Salvi, E., Staessen, J.A., Ridker, P.M., Grallert, H., Meisinger, C., Müller-Nurasyid, M., Krämer, B.K., Kramer, H., Rosas, S.E., Nolte, I.M., Penninx, B.W., Snieder, H., Fabiola Del Greco, M., Franke, A., Nöthlings, U., Lieb, W., Bakker, S.J., Gansevoort, R.T., van der Harst, P., Dehghan, A., Franco, O.H., Hofman, A., Rivadeneira, F., Sedaghat, S., Uitterlinden, A.G., Coassin, S., Haun, M., Kollerits, B., Kronenberg, F., Paulweber, B., Aumann, N., Endlich, K., Pietzner, M., Völker, U., Rettig, R., Chouraki, V., Helmer, C., Lambert, J.C., Metzger, M., Stengel, B., Lehtimäki, T., Lyytikäinen, L.P., Raitakari, O., Johnson, A., Parsa, A., Bochud, M., Heid, I.M., Goessling, W., Köttgen, A., Kao, W.H., Fox, C.S., Böger, C.A. (2015) Genome-wide association study of kidney function decline in individuals of European descent. Kidney International. 87(5):1017-29
Toro, C., Trapani, J.G., Pacentine, I., Maeda, R., Sheets, L., Mo, W., Nicolson, T. (2015) Dopamine Modulates the Activity of Sensory Hair Cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 35(50):16494-16503
Varshney, G.K., Pei, W., LaFave, M.C., Idol, J., Xu, L., Gallardo, V., Carrington, B., Bishop, K., Jones, M., Li, M., Harper, U., Huang, S.C., Prakash, A., Chen, W., Sood, R., Ledin, J., Burgess, S.M. (2015) High-throughput gene targeting and phenotyping in zebrafish using CRISPR/Cas9. Genome research. 25(7):1030-42
Blanco-Sánchez, B., Clément, A., Fierro, J., Washbourne, P., Westerfield, M. (2014) Complexes of Usher proteins preassemble at the endoplasmic reticulum and are required for trafficking and ER homeostasis. Disease models & mechanisms. 7:547-59
Maeda, R., Kindt, K.S., Mo, W., Morgan, C.P., Erickson, T., Zhao, H., Clemens-Grisham, R., Barr-Gillespie, P.G., Nicolson, T. (2014) Tip-link protein protocadherin 15 interacts with transmembrane channel-like proteins TMC1 and TMC2. Proceedings of the National Academy of Sciences of the United States of America. 111(35):12907-12
Samarut, E., Gaudin, C., Hughes, S., Gillet, B., de Bernard, S., Jouve, P.E., Buffat, L., Allot, A., Lecompte, O., Berekelya, L., Rochette-Egly, C., and Laudet, V. (2014) Retinoic acid receptor subtype-specific transcriptotypes in the early zebrafish embryo. Molecular endocrinology (Baltimore, Md.). 28(2):260-272
Thomas, A.J., Hailey, D.W., Stawicki, T.M., Wu, P., Coffin, A.B., Rubel, E.W., Raible, D.W., Simon, J.A., and Ou, H.C. (2013) Functional mechanotransduction is required for Cisplatin-induced hair cell death in the zebrafish lateral line. The Journal of neuroscience : the official journal of the Society for Neuroscience. 33(10):4405-4414
Varshney, G.K., Lu, J., Gildea, D., Huang, H., Pei, W., Yang, Z., Huang, S.C., Schoenfeld, D.S., Pho, N., Casero, D., Hirase, T., Mosbrook-Davis, D.M., Zhang, S., Jao, L.E., Zhang, B., Woods, I.G., Zimmerman, S., Schier, A.F., Wolfsberg, T., Pellegrini, M., Burgess, S.M., and Lin, S. (2013) A large-scale zebrafish gene knockout resource for the genome-wide study of gene function. Genome research. 23(4):727-735
Einhorn, Z., Trapani, J.G., Liu, Q., and Nicolson, T. (2012) Rabconnectin3alpha promotes stable activity of the H+ pump on synaptic vesicles in hair cells. The Journal of neuroscience : the official journal of the Society for Neuroscience. 32(32):11144-11156
Glover, G., Mueller, K.P., Söllner, C., Neuhauss, S.C., and Nicolson, T. (2012) The Usher gene cadherin 23 is expressed in the zebrafish brain and a subset of retinal amacrine cells. Molecular Vision. 18:2309-2322
Hailey, D.W., Roberts, B., Owens, K.N., Stewart, A.K., Linbo, T., Pujol, R., Alper, S.L., Rubel, E.W., and Raible, D.W. (2012) Loss of Slc4a1b Chloride/Bicarbonate Exchanger Function Protects Mechanosensory Hair Cells from Aminoglycoside Damage in the Zebrafish Mutant persephone. PLoS Genetics. 8(10):e1002971
Kindt, K.S., Finch, G., and Nicolson, T. (2012) Kinocilia mediate mechanosensitivity in developing zebrafish hair cells. Developmental Cell. 23(2):329-341
Obholzer, N., Swinburne, I.A., Schwab, E., Nechiporuk, A.V., Nicolson, T., and Megason, S.G. (2012) Rapid positional cloning of zebrafish mutations by linkage and homozygosity mapping using whole-genome sequencing. Development (Cambridge, England). 139(22):4280-4290
Mo, W., and Nicolson, T. (2011) Both pre- and postsynaptic activity of nsf prevents degeneration of hair-cell synapses. PLoS One. 6(11):e27146
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Additional Citations (26):
Burgess, S., and Lin, S. (2012) Viral Insertion Mutants Overwrite Data. ZFIN Direct Data Submission.
Burgess, S., and Lin, S. (2011) Viral Insertion Mutants. ZFIN Direct Data Submission.
Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.
Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.
Geisler, R. (2013) Importation of Tübingen internal allele names. ZFIN Direct Data Submission.
Phenotype Annotation (1994-2006) (2006) Mutant Data Curated from Older Literature. ZFIN Historical Data.
UniProt curators (2015) Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.. Automated Data Submission.
Varshney, G.K., Zhang, S., Burgess, S.M., ZFIN Staff (2015) Automated Data Load From CRISPRz. ZFIN Direct Data Submission.
Zebrafish Nomenclature Committee (2003) Nomenclature Data Curation (2003-2010). Nomenclature Committee Submission.
Zebrafish Nomenclature Committee (2011) Nomenclature Requests: Mutant and Transgenic Name Reservations (2011). Nomenclature Committee Submission.
Zebrafish Nomenclature Committee (2015) Nomenclature Data Curation (2015). Nomenclature Committee Submission.
ZFIN Staff (2002) Scientific Curation. Manually curated data.
ZFIN Staff (2003) Curation of orthology data. Manually curated data.
ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.
ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.
ZFIN Staff (2015) Data Model Change: Sequence Targeting Reagents Removed from Environment. ZFIN Historical Data.
ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.
ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.
ZFIN Staff (2024) Association of Ensembl transcripts with ZFIN genes. Semi-automated Curation.
ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.
ZFIN Staff (2003) Submission and Curation of Mutant and Transgenic Lines. ZFIN Direct Data Submission.
ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.
ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.
ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.
ZFIN Staff (2004) Temporary Manual Curation. Manually curated data.
ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.
ZFIN Staff (2024) Association of Ensembl transcripts with ZFIN genes. Semi-automated Curation.
ZFIN Staff (2023) Automated Curation of UniProt Database Links. Automated Data Submission.
ZFIN Staff (2020) Addition of links from ZFIN to Expression Atlas. Semi-automated Curation.
ZFIN Staff (2017) Curation of PANTHER Gene IDs. Automated Data Submission.
ZFIN Staff (2017) Curation of Alliance of Genome Resources Database Links. Automated Data Submission.
UniProt curators (2015) Electronic Gene Ontology annotations created by transferring manual GO annotations between related proteins based on shared sequence features.. Automated Data Submission.
Varshney, G.K., Zhang, S., Burgess, S.M., ZFIN Staff (2015) Automated Data Load From CRISPRz. ZFIN Direct Data Submission.
Zebrafish Nomenclature Committee (2015) Nomenclature Data Curation (2015). Nomenclature Committee Submission.
ZFIN Staff (2015) Data Model Change: Sequence Targeting Reagents Removed from Environment. ZFIN Historical Data.
Busch-Nentwich, E., Kettleborough, R., Dooley, C. M., Scahill, C., Sealy, I., White, R., Herd, C., Mehroke, S., Wali, N., Carruthers, S., Hall, A., Collins, J., Gibbons, R., Pusztai, Z., Clark, R., and Stemple, D.L. (2013) Sanger Institute Zebrafish Mutation Project mutant data submission. ZFIN Direct Data Submission.
Geisler, R. (2013) Importation of Tübingen internal allele names. ZFIN Direct Data Submission.
ZFIN Staff (2013) Semi-automated association of ENSDARG identifiers with ZFIN genes for the ZMP project. Semi-automated Curation.
Burgess, S., and Lin, S. (2012) Viral Insertion Mutants Overwrite Data. ZFIN Direct Data Submission.
Burgess, S., and Lin, S. (2011) Viral Insertion Mutants. ZFIN Direct Data Submission.
Zebrafish Nomenclature Committee (2011) Nomenclature Requests: Mutant and Transgenic Name Reservations (2011). Nomenclature Committee Submission.
Gaudet, P., Livstone, M., Thomas, P., The Reference Genome Project (2010) Annotation inferences using phylogenetic trees. Automated Data Submission.
Phenotype Annotation (1994-2006) (2006) Mutant Data Curated from Older Literature. ZFIN Historical Data.
ZFIN Staff (2004) Temporary Manual Curation. Manually curated data.
Zebrafish Nomenclature Committee (2003) Nomenclature Data Curation (2003-2010). Nomenclature Committee Submission.
ZFIN Staff (2003) Submission and Curation of Mutant and Transgenic Lines. ZFIN Direct Data Submission.
ZFIN Staff (2003) Curation of VEGA Database Links. Automated Data Submission.
ZFIN Staff (2003) Curation of orthology data. Manually curated data.
ZFIN Staff (2002) Gene Ontology Annotation Through Association of UniProt Keywords with GO Terms. Automated Data Submission.
ZFIN Staff (2002) Curation of NCBI Gene Data Via Shared RNA Sequence IDs. Automated Data Submission.
ZFIN Staff (2002) Scientific Curation. Manually curated data.
ZFIN Staff (2002) Gene Ontology Annotation Through Association of InterPro Records with GO Terms. Automated Data Submission.
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