ZFIN ID: ZDB-GENE-990415-14

Mapping Details

Gene Name:	apolipoprotein A-Ia
Symbol:	apoa1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	5	37,978,501 - 37,981,521	GRCz11
Ensembl	5	37,978,501 - 37,981,521	GRCz11
Vega	5	37,378,348 - 37,381,368	GRCv10
NCBI Map Viewer	5	37,978,512 - 37,981,518	GRCz11
UCSC	5	-	GRCv10

Mapped Clones containing apoa1a
CH211-139A5	Chr: 5 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
sa10582	5	37,981,062	GRCz11	Busch-Nentwich et al., 2013
	5	37,380,909	GRCz10	Busch-Nentwich et al., 2013
	5	39,581,519	Zv9	Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
5	192.2 cR	apoa	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
5	81.6 cM	apoa	Heat Shock (HS)	Woods, Ian G.	Data
5	64.71 cM	apoa	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
dmrt2a	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
z8122	SSLP	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
atp1b2b	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
ins	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
zehn1245	EST	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.
epd	GENE	5		Rajarao et al., 2002	Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to apoa, ins, terra, epd, and zehn1245 at position 87.8 cM on the HS mapping panel. They confirm this linkage assignment by mapping atp1b2b to LG05 near z8122 on the T51 mapping panel.

Chr 5

Rajarao et al., 2002

Rajarao, et al. (2002. Dev Dyn 223:254-261.) reports mapping atp1b2b to LG05 close to ...

Markers Encoded by apoa1a
fb33f01 Chr: 5 Details