ZFIN ID: ZDB-GENE-980526-561

Mapping Details

Gene Name:	myogenic differentiation 1
Symbol:	myod1

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN JBrowse	25	31,421,253 - 31,423,493	GRCz11
Ensembl	25	31,421,253 - 31,423,493	GRCz11
Vega	25	30,843,777 - 30,846,017	GRCv10
NCBI Map Viewer	25	31,421,253 - 31,423,459	GRCz11
UCSC	25	-	GRCz11

Mapped Clones containing myod1
CH211-201M7	Chr: 25 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Citations
fh261	25	31,422,905	GRCz11	ZFIN Curated Data
hu2023	25	31,422,131	GRCz11	Busch-Nentwich et al., 2013
	25	30,844,655	GRCz10	Busch-Nentwich et al., 2013
	25	32,265,402	Zv9	Busch-Nentwich et al., 2013
hu2024	25	31,421,995	GRCz11	Busch-Nentwich et al., 2013
	25	30,844,519	GRCz10	Busch-Nentwich et al., 2013
	25	32,265,266	Zv9	Busch-Nentwich et al., 2013

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
25	114.3 cM	myod	Mother of Pearl (MOP)	Postlethwait, John H.	Data
25	365.81 cR	myod	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data
25	3341.0 cR	myod	Goodfellow T51 (T51)	Geisler, Robert	Data
25	72.5 cM	myod	Heat Shock (HS)	Woods, Ian G.	Data
25	76.6 cM	myod	Gates et al (GAT)	Talbot, William S.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
lamb4	GENE	25		Parsons et al., 2002	Parsons, et al. (2002. Dev 129:3137-3146.) report mapping lamb1 to LG25 approximately 0.42 cM from myod on the MOP mapping panel. Using the LN54 mapping panel, Parsons, et al. localize lamb1 approximately 20 cR away from myod and also found an EST (fa05e06) that corresponds to lamb4 that maps between myod and lamb1.
lamb1a	GENE	25	20.0 cR	Parsons et al., 2002	Parsons, et al. (2002. Dev 129:3137-3146.) report mapping lamb1 to LG25 approximately 0.42 cM from myod on the MOP mapping panel. Using the LN54 mapping panel, Parsons, et al. localize lamb1 approximately 20 cR away from myod and also found an EST (fa05e06) that corresponds to lamb4 that maps between myod and lamb1.

Markers Encoded by myod1
fb57a01 Chr: 25 Details

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	750	DdeI	36.0
Forward Primer	ATGAGGGATCTGTCCTGAGTG
Reverse Primer	TTGTTCGTTTTCGTCGCTTT