ZFIN ID: ZDB-GENE-011010-3

Mapping Details

Gene Name: aldehyde dehydrogenase 1 family, member A2
Symbol: aldh1a2
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position
ZFIN Gbrowse 7 30,326,184 - 30,367,650
ZFIN Gbrowse 7 30,326,184 - 30,367,650
Ensembl 7 30,326,184 - 30,367,650
Ensembl 7 30,326,184 - 30,367,650
Vega 7 30,055,034 - 30,096,500
NCBI Map Viewer 7 30,327,056 - 30,367,514
UCSC 7 -
Mapped Clones containing aldh1a2
CH211-94N14 Chr: 7 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Citations
i26 7 30,341,642 GRCz11 Begemann et al., 2001
sa2367 7 30,330,356 GRCz11 Busch-Nentwich et al., 2013
7 30,059,206 GRCz10 Busch-Nentwich et al., 2013
7 31,666,864 Zv9 Busch-Nentwich et al., 2013
sa16776 7 30,333,492 GRCz11 Busch-Nentwich et al., 2013
7 30,062,342 GRCz10 Busch-Nentwich et al., 2013
7 31,670,000 Zv9 Busch-Nentwich et al., 2013
tpl137 7 30,333,250 - 30,333,733 GRCz11 Burg et al., 2018
tpl138 7 30,333,264 - 30,333,729 GRCz11 Burg et al., 2018
tpl139Tg 7 30,333,729 - 30,333,730 GRCz11 Burg et al., 2018
u11 7 30,330,444 GRCz11 Grandel et al., 2002

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
7 2980.0 cR raldh2 Goodfellow T51 (T51) Geisler, Robert Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z11119 SSLP 7 Begemann et al., 2001 Begemann, et al. (2001. Dev 128:3081-3094.) report aldh1a2 corresponds to an  ...
z8693 SSLP 7 Begemann et al., 2001 Begemann, et al. (2001. Dev 128:3081-3094.) report aldh1a2 corresponds to an  ...
fb50h01 EST 7 0.0 cM Grandel et al., 2002 Grandel et al. (2002. Development 129:2851-2865) report mapping aldh1a2 to LG 7 at a distance of 49 cR from the marker z9273, using the T51 radiation hybrid mapping panel. aldh1a2 mapped adjacent to EST fb50h01, which is a fragment of aldh1a2 near the 5' end.
z9273 SSLP 7 49.0 cR Grandel et al., 2002 Grandel et al. (2002. Development 129:2851-2865) report mapping aldh1a2 to LG 7 at a distance of 49 cR from the marker z9273, using the T51 radiation hybrid mapping panel. aldh1a2 mapped adjacent to EST fb50h01, which is a fragment of aldh1a2 near the 5' end.

OTHER MAPPING INFORMATION
Chr 7 Begemann et al., 2001 Begemann, et al. (2001. Dev 128:3081-3094.) report aldh1a2 corresponds to an EST (fb50h01) mapped  ...
Markers Encoded by aldh1a2
fb50h01 Chr: 7 Details
Genomic Feature i26 is an allele of aldh1a2
Marker Type Chr Distance Publication / Person Comments
z11119 SSLP 7 Begemann et al., 2001 Begemann, et al. (2001. Dev 128:3081-3094.) used bulk segregant analysis to  ...
z8693 SSLP 7 Begemann et al., 2001 Begemann, et al. (2001. Dev 128:3081-3094.) used bulk segregant analysis to  ...
fb50h01 EST 7 Begemann et al., 2001 Begemann, et al. (2001. Dev 128:3081-3094.) used bulk segregant analysis to  ...
Genomic Feature um22 is an allele of aldh1a2
Marker Type Chr Distance Publication / Person Comments
z8693 SSLP 7 Alexa et al., 2009 Alexa et al. (2009.PLoS One 4(12):e8261) report mapping um22 to LG7, linked to  ...
z10441 SSLP 7 7.0 cM Alexa et al., 2009 Alexa et al. (2009.PLoS One 4(12):e8261) report mapping um22 to LG7, linked to  ...
Genomic Feature nz15 is an allele of aldh1a2
Marker Type Chr Distance Publication / Person Comments
z4999 SSLP 7 6.38 cM Wingert et al., 2011 Wingert and Davidson report mapping n15 to Chr. 7 using meiotic mapping.
z1182 SSLP 7 3.04 cM Wingert et al., 2011 Wingert and Davidson report mapping n15 to Chr. 7 using meiotic mapping.
z11894 SSLP 7 1.0 cM Wingert et al., 2011 Wingert and Davidson report mapping n15 to Chr. 7 using meiotic mapping.
z8693 SSLP 7 0.14 cM Wingert et al., 2011 Wingert and Davidson report mapping n15 to Chr. 7 using meiotic mapping.
Genomic Feature i26 is an allele of aldh1a2
Chr 7 Begemann et al., 2001 Begemann, et al. (2001. Dev 128:3081-3094.) used bulk segregant analysis to demonstrate the nls  ...