ZFIN ID: ZDB-GENE-000822-1

Mapping Details

Gene Name:	homeobox C6b
Symbol:	hoxc6b

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	11	2,227,024 - 2,232,935	GRCz12tu
NCBI Map Viewer	11	2,227,024 - 2,232,935	GRCz12tu
Ensembl	11	2,198,831 - 2,204,754	GRCz11
NCBI Map Viewer	11	2,189,942 - 2,204,754	GRCz11
UCSC	11	-	GRCz11
UCSC	11	-	GRCz11
Vega	11	2,099,938 - 2,107,059	GRCv10

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	DetailedSource	Citations
sa21828	11	2,232,059	GRCz12tu	DIRECT		Sealy et al., 2025
	11	2,203,878	GRCz11	DIRECT		Busch-Nentwich et al., 2013
	11	2,101,858	GRCz10	DIRECT		Busch-Nentwich et al., 2013
	11	2,149,405	Zv9	DIRECT		Busch-Nentwich et al., 2013
sud124a	11	2,203,167 - 2,203,170	GRCz11	DIRECT		Yamada et al., 2021
sud126	11	2,203,167 - 2,203,172	GRCz11	DIRECT		Maeno et al., 2024
sa21828	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
sud124a	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers
sud126	11		GRCz11	OTHER_MAPPING	Feature location obtained from related gene that has mapped_marker info
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneGBrowse
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGeneLinkage
	11		GRCz11	OTHER_MAPPING	featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
11	68.35 cR	Hoxy6	Loeb/NIH/5000/4000 (LN54)	Dawid, Igor B.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

MAPPING FROM PUBLICATIONS
Marker	Type	Chr	Distance	Publication / Person	Comments
hoxc11b	GENE	11		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc13b	GENE	11		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc12b	GENE	11		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, hoxc12b, hoxc11b, and hoxc6b are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG11.
hoxc11b	GENE	11		Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and hoxc11b.
mir196c	MIRNAG	11		Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and hoxc11b.

Chr 11	Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report hoxc13b, ...
Chr 11	Yekta et al., 2004	Yekta et al. (2005, Science 304(5670):594-596) mapped mirn196a.2b between hoxc6b and ...

Markers Encoded by hoxc6b
wz12007 Chr: 11 Details

Genomic Feature sud124a is an allele of hoxc6b