ZFIN ID: ZDB-GENE-000822-3
Gene Name: homeobox C11b
Gene Symbol: hoxc11b    Nomenclature History

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Previous Names: Hoxa11, im:7165141

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 11 Mapping Details/Browsers
Description: Predicted to have sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription, DNA-templated. Predicted to localize to nucleus. Is expressed in presumptive telencephalon; pronephric duct; pronephric mesoderm; pronephros; and tail bud. Orthologous to human HOXC11 (homeobox C11).
Genome Resources: Alliance (1),  Gene:570925 (1),  Ensembl(GRCz11):ENSDARG00000102631 (1)
GENE EXPRESSION
All Expression Data: 13 figures from 3 publications
Directly Submitted Expression Data: 6 figures (7 images) from Thisse et al., 2005 [eu752]
  6 figures (9 images) from Thisse et al., 2004 [IMAGE:7165141]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Pharyngula:Prim-25 (36.0h-42.0h)
 
High Throughput Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa35003 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • PHENOTYPE No data available
    DISEASE ASSOCIATED WITH hoxc11b HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxc11b VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process regulation of transcription, DNA-templated (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 4)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA hoxc11b-201 (1)    Ensembl 1398
    Browsers: NCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM hoxc11b No data available
    MARKER RELATIONSHIPS
    hoxc11b Encodes: [EST] eu752 (1), IMAGE:7165141 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:XM_694457 (1) 3265 nt
    Genomic GenBank:DU644881 (1) 361 nt
    Polypeptide UniProtKB:A0A0R4IDM3 (1) 306 aa
    Sequence Information (all 19)
    ORTHOLOGY for hoxc11b ( Chr: 11 )
    CITATIONS (27)