ZFIN ID: ZDB-GENE-980526-115

ZFIN ID: ZDB-GENE-980526-115

Mapping Details

Gene Name:	nuclear receptor subfamily 2, group F, member 1a
Symbol:	nr2f1a

PHYSICAL MAP AND BROWSER

Genome Browser	Chr	Position	Assembly
ZFIN	5	53,815,949 - 53,822,862	GRCz12tu
NCBI Map Viewer	5	53,815,949 - 53,822,862	GRCz12tu
Ensembl	5	49,744,713 - 49,751,549	GRCz11
NCBI Map Viewer	5	49,744,782 - 49,751,528	GRCz11
UCSC	5	-	GRCz11
Vega	5	49,093,202 - 49,100,038	GRCv10

Mapped Clones containing nr2f1a
DKEYP-10A3	Chr: 5 Details

PHYSICAL MAPPING

Feature	Chr	Position	Assembly	Source	Citations
ci1009	5	49,747,221 - 49,747,269	GRCz11	DIRECT	Duong et al., 2017
ci1017	5	53,816,594 - 53,816,651	GRCz12tu	DIRECT	Gafranek et al., 2023
ci1036	5	53,825,751 - 53,826,107	GRCz12tu	DIRECT	Coppola et al., 2024
el512	5	49,745,891 - 49,745,898	GRCz11	DIRECT	Barske et al., 2018
sa11358	5	53,817,041	GRCz12tu	DIRECT	Sealy et al., 2025
	5	49,745,762	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	5	49,094,251	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	5	51,528,553	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa14691	5	53,821,737	GRCz12tu	DIRECT	Sealy et al., 2025
	5	49,750,408	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	5	49,098,897	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	5	51,533,199	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa20527	5	53,816,976	GRCz12tu	DIRECT	Sealy et al., 2025
	5	49,745,697	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	5	49,094,186	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	5	51,528,488	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa40551	5	53,821,649	GRCz12tu	DIRECT	Sealy et al., 2025
	5	49,750,320	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	5	49,098,809	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	5	51,533,111	Zv9	DIRECT	Busch-Nentwich et al., 2013
sa45227	5	53,821,675	GRCz12tu	DIRECT	Sealy et al., 2025
	5	49,750,346	GRCz11	DIRECT	Busch-Nentwich et al., 2013
	5	49,098,835	GRCz10	DIRECT	Busch-Nentwich et al., 2013
	5	51,533,137	Zv9	DIRECT	Busch-Nentwich et al., 2013
sud21	5	49,745,798 - 49,745,801	GRCz11	DIRECT	Chowdhury et al., 2024
ci1009	5		GRCz11	OTHER_MAPPING	ZFIN Curated Data
el512	5		GRCz11	OTHER_MAPPING	ZFIN Curated Data
sud21	5		GRCz11	OTHER_MAPPING	ZFIN Curated Data

GENETIC MAPPING PANELS
Chr	Location	Mapped As	Panel	Mapped By	Scoring
5	145.3 cM	svp44	Mother of Pearl (MOP)	Postlethwait, John H.	Data
5	3541.0 cR	nr2f1	Goodfellow T51 (T51)	Geisler, Robert	Data
5	96.6 cM	nr2f1	Heat Shock (HS)	Woods, Ian G.	Data

Note: Physical map location as displayed in the genome browsers is more precise than linkage map location. Note: Physical map location should be used whenever possible.

Primer Sets:
Strain	Bandsize	Restriction Enzyme	Annealing Temperature [C]
SJD	963	HinFI	36.0
Forward Primer	TGTTATTATCCGGGAGCAGC
Reverse Primer	TGCACAGGCATATCATGGAT

Genomic Feature el512 is an allele of nr2f1a