ZFIN ID: ZDB-GENE-990415-201

Mapping Details

Gene Name: paired box 7a
Symbol: pax7a
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 11 43,582,698 - 43,718,594 GRCz12tu
NCBI Map Viewer 11 43,582,698 - 43,718,594 GRCz12tu
Ensembl 11 41,242,644 - 41,372,948 GRCz11
NCBI Map Viewer 11 41,243,065 - 41,378,029 GRCz11
UCSC 11 - GRCz11
UCSC 11 - GRCz11
Vega 11 40,652,295 - 40,787,221 GRCv10
Mapped Clones containing pax7a
CH73-132O13 Chr: 11 Details
CH211-168O24 Chr: 11 Details
CH73-220M10 Chr: 11 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
oz19 11 41,244,666 - 41,244,672 GRCz11 DIRECT Berberoglu et al., 2017
oz23 11 41,244,666 - 41,244,668 GRCz11 DIRECT Berberoglu et al., 2017
sa14696 11 43,646,513 GRCz12tu DIRECT Sealy et al., 2025
11 41,306,150 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 40,715,351 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 42,478,275 Zv9 DIRECT Busch-Nentwich et al., 2013
sa35152 11 43,704,232 GRCz12tu DIRECT Sealy et al., 2025
11 41,363,666 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 40,772,867 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 42,420,759 Zv9 DIRECT Busch-Nentwich et al., 2013
sa41908 11 43,648,233 GRCz12tu DIRECT Sealy et al., 2025
11 41,307,870 GRCz11 DIRECT Busch-Nentwich et al., 2013
11 40,717,071 GRCz10 DIRECT Busch-Nentwich et al., 2013
11 42,476,555 Zv9 DIRECT Busch-Nentwich et al., 2013
umu3 11 41,243,457 - 41,243,460 GRCz11 DIRECT Nord et al., 2016
oz19 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
oz23 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
sa14696 11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa35152 11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa41908 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
umu3 11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
11 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
11 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
11 143.8 cM pax7D Mother of Pearl (MOP) Postlethwait, John H. Data
11 2499.0 cR pax7e Goodfellow T51 (T51) Geisler, Robert Data
11 89.4 cM pax7a Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
s1018tEt Feature 11 Scott et al., 2007 Scott et al. report insertion of the enhancer trap into the 4th intron of pax7.

OTHER MAPPING INFORMATION
Chr 11 Scott et al., 2007 Scott et al. report insertion of the enhancer trap into the 4th intron of pax7.
Genomic Feature umu3 is an allele of pax7a
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