Mapping Details

Genome Browser Chr Position Assembly ZFIN JBrowse 9 1,937,049 - 1,939,232 GRCz11 Ensembl 9 1,937,049 - 1,939,232 GRCz11 Vega 9 1,936,252 - 1,958,755 GRCv10 NCBI Map Viewer 9 1,931,420 - 1,959,600 GRCz11 UCSC 9 - GRCz11

Mapped Clones containing hoxd3a
RP71-78H1	Chr: 9 Details

GENETIC MAPPING PANELS: No data available

MAPPING FROM PUBLICATIONS

Marker	Type	Chr	Distance	Publication / Person	Comments
hoxd13a	GENE	9		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2, hoxd13a, hoxd12a, hoxd11a, hoxd10a, hoxd9a, hoxd4a, and hoxd3a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG09.
hoxd4a	GENE	9		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2, hoxd13a, hoxd12a, hoxd11a, hoxd10a, hoxd9a, hoxd4a, and hoxd3a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG09.
hoxd9a	GENE	9		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2, hoxd13a, hoxd12a, hoxd11a, hoxd10a, hoxd9a, hoxd4a, and hoxd3a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG09.
hoxd10a	GENE	9		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2, hoxd13a, hoxd12a, hoxd11a, hoxd10a, hoxd9a, hoxd4a, and hoxd3a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG09.
evx2	GENE	9		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2, hoxd13a, hoxd12a, hoxd11a, hoxd10a, hoxd9a, hoxd4a, and hoxd3a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG09.
hoxd11a	GENE	9		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2, hoxd13a, hoxd12a, hoxd11a, hoxd10a, hoxd9a, hoxd4a, and hoxd3a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG09.
hoxd12a	GENE	9		Amores et al., 1998	Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2, hoxd13a, hoxd12a, hoxd11a, hoxd10a, hoxd9a, hoxd4a, and hoxd3a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG09.
smb846Et	Feature	9		Punnamoottil et al., 2008	Punnamoottil, et al. (2008.Dev. Dyn. 237(8): 2195-2208) mapped the proviral  ... Punnamoottil, et al. (2008.Dev. Dyn. 237(8): 2195-2208) mapped the proviral insertion Et(CLG-YFP)smb846 (CLGY846) to a position 6.5 kb downstream of hoxd4a, and 7 kb upstream of hoxd3a on LG9. The genomic sequence flanking the CLGY846 insertion (TAACCGCTGAAATTCTGT) was BLASTed against Ensembl assembly Zv7.
hoxd4a	GENE	9		Punnamoottil et al., 2008	Punnamoottil, et al. (2008.Dev. Dyn. 237(8): 2195-2208) mapped the proviral  ... Punnamoottil, et al. (2008.Dev. Dyn. 237(8): 2195-2208) mapped the proviral insertion Et(CLG-YFP)smb846 (CLGY846) to a position 6.5 kb downstream of hoxd4a, and 7 kb upstream of hoxd3a on LG9. The genomic sequence flanking the CLGY846 insertion (TAACCGCTGAAATTCTGT) was BLASTed against Ensembl assembly Zv7.

OTHER MAPPING INFORMATION

Chr 9 Amores et al., 1998 Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2,  ... Using overlapping PAC clones, Amores, et al. (1998. Science 282:1711-1714.) report evx2, hoxd13a, hoxd12a, hoxd11a, hoxd10a, hoxd9a, hoxd4a, and hoxd3a are clustered on a continuous region of the genome. Subsequent mapping of one or more of these genes localize all to LG09.   Chr 9 Punnamoottil et al., 2008 Punnamoottil, et al. (2008.Dev. Dyn. 237(8): 2195-2208) mapped the proviral insertion  ... Punnamoottil, et al. (2008.Dev. Dyn. 237(8): 2195-2208) mapped the proviral insertion Et(CLG-YFP)smb846 (CLGY846) to a position 6.5 kb downstream of hoxd4a, and 7 kb upstream of hoxd3a on LG9. The genomic sequence flanking the CLGY846 insertion (TAACCGCTGAAATTCTGT) was BLASTed against Ensembl assembly Zv7.