ZFIN is now using GRCz12tu for Genomic Data
Gene
hoxd3a
- ID
- ZDB-GENE-990415-120
- Name
- homeobox D3a
- Symbol
- hoxd3a Nomenclature History
- Previous Names
-
- hoxd3
- im:7144208 (1)
- Z-56
- Type
- protein_coding_gene
- Location
- Chr: 9 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of DNA-templated transcription. Predicted to be active in nucleus. Is expressed in several structures, including hindbrain; hindbrain neural keel; neural tube; pectoral fin bud; and spinal cord. Orthologous to human HOXD3 (homeobox D3).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 14 figures from 8 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- IMAGE:7144208 (6 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Conserved_site | IPR001827 | Homeobox protein, antennapedia type, conserved site |
| Conserved_site | IPR017970 | Homeobox, conserved site |
| Domain | IPR001356 | Homeodomain |
| Domain | IPR020479 | Homeodomain, metazoa |
| Domain | IPR025281 | Domain of unknown function DUF4074 |
| Homologous_superfamily | IPR009057 | Homedomain-like superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | Domain of unknown function DUF4074 | Homedomain-like superfamily | Homeobox, conserved site | Homeobox protein, antennapedia type, conserved site | Homeodomain | Homeodomain, metazoa |
|---|---|---|---|---|---|---|---|---|
| UniProtKB:O42370 | InterPro | 396 | ||||||
| UniProtKB:A0A8M9PRW4 | InterPro | 396 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
hoxd3a-201
(1)
|
Ensembl | 2,567 nt | ||
| mRNA |
hoxd3a-203
(1)
|
Ensembl | 1,970 nt | ||
| mRNA |
hoxd3a-204
(1)
|
Ensembl | 1,919 nt | ||
| ncRNA |
hoxd3a-002
(1)
|
Ensembl | 480 nt |
Interactions and Pathways
No data available
Plasmids
- Genome Browsers