ZFIN ID: ZDB-GENE-990714-26

Mapping Details

Gene Name: lymphoid enhancer-binding factor 1
Symbol: lef1
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 1 53,128,721 - 53,218,083 GRCz12tu
NCBI Map Viewer 1 53,128,721 - 53,218,083 GRCz12tu
Ensembl 1 49,814,461 - 49,903,487 GRCz11
NCBI Map Viewer 1 49,814,524 - 49,903,487 GRCz11
UCSC 1 - GRCz11
Vega 1 49,170,635 - 49,259,661 GRCv10
Mapped Clones containing lef1
DKEY-252L8 Chr: 1 Details
DKEY-5K4 Chr: 1 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
nl2 1 49,885,453 - 49,885,454 GRCz11 DIRECT McGraw et al., 2011
sa10902 1 53,194,949 GRCz12tu DIRECT Sealy et al., 2025
1 49,880,363 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 49,236,537 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 50,387,446 Zv9 DIRECT Busch-Nentwich et al., 2013
sa18709 1 53,194,949 GRCz12tu DIRECT Sealy et al., 2025
1 49,880,363 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 49,236,537 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 50,387,446 Zv9 DIRECT Busch-Nentwich et al., 2013
sa32764 1 53,200,052 GRCz12tu DIRECT Sealy et al., 2025
1 49,885,466 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 49,241,640 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 50,392,549 Zv9 DIRECT Busch-Nentwich et al., 2013
sa39684 1 53,200,083 GRCz12tu DIRECT Sealy et al., 2025
1 49,885,497 GRCz11 DIRECT Busch-Nentwich et al., 2013
1 49,241,671 GRCz10 DIRECT Busch-Nentwich et al., 2013
1 50,392,580 Zv9 DIRECT Busch-Nentwich et al., 2013
u767 1 49,816,670 GRCz11 DIRECT Valdivia et al., 2011
la013709Tg 1 50,321,722 - 50,321,732 Zv9 ZFIN_Zv9 BurgessLin
la021271Tg 1 50,321,800 - 50,321,810 Zv9 ZFIN_Zv9 BurgessLin
la021272Tg 1 50,353,201 - 50,353,211 Zv9 ZFIN_Zv9 BurgessLin
la021273Tg 1 50,353,518 - 50,353,528 Zv9 ZFIN_Zv9 BurgessLin
la021274Tg 1 50,378,124 - 50,378,134 Zv9 ZFIN_Zv9 BurgessLin
nl2 1 GRCz11 GENERAL_LOAD load data [singleton]
la013709Tg 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
la021271Tg 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
la021272Tg 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la021273Tg 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
la021274Tg 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
nl2 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa10902 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
sa18709 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
sa32764 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
sa39684 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
u767 1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
1 GRCz11 OTHER_MAPPING linkagesDirectMem2
1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING linkagesDirectMem1
zd11 1 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
1 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
1 443.28 cR lef1 Loeb/NIH/5000/4000 (LN54) Johnson, Stephen L. Data
1 6302.0 cR lef1 Goodfellow T51 (T51) Cretekos, Chris Data
1 79.8 cM lef1 Heat Shock (HS) Woods, Ian G. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
Df(Chr01:lef1,msxb)x8 Feature 1 Phillips et al., 2006
msx1b GENE 1 Phillips et al., 2006

OTHER MAPPING INFORMATION
Chr 1 Phillips et al., 2006
Chr 1 Dorsky et al., 1999 Dorsky et al. (1999. Mechanisms of Development 86:147-150) report mapping lef1 to Chromosome 1,  ...
Genomic Feature u767 is an allele of lef1
Marker Type Chr Distance Publication / Person Comments
z11464 SSLP 1 2.3 cM Valdivia et al., 2011
z9704 SSLP 1 4.6 cM Valdivia et al., 2011
Genomic Feature nl2 is an allele of lef1
Chr 1 McGraw et al., 2011 McGraw et.al. (2011) mapped the lef1nl2 mutation toa 460 Kb region on Chr.1.
Genomic Feature la021271Tg is an allele of lef1
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