ZFIN ID: ZDB-GENE-000201-18

Mapping Details

Gene Name: pre-B-cell leukemia transcription factor 4
Symbol: pbx4
PHYSICAL MAP AND BROWSER
Genome Browser Chr Position Assembly
ZFIN 3 55,536,201 - 55,609,578 GRCz12tu
NCBI Map Viewer 3 55,536,201 - 55,609,578 GRCz12tu
Ensembl 3 52,999,962 - 53,076,469 GRCz11
NCBI Map Viewer 3 52,999,962 - 53,074,922 GRCz11
UCSC 3 - GRCz11
Vega 3 52,745,299 - 52,821,806 GRCv10
Mapped Clones containing pbx4
DKEY-189E16 Chr: 3 Details
PHYSICAL MAPPING
Feature Chr Position Assembly Source DetailedSource Citations
b557 3 53,001,025 GRCz11 DIRECT Pöpperl et al., 2000
hi933Tg 3 53,042,529 - 53,042,530 GRCz11 DIRECT ZFIN Curated Data
scm14 3 53,047,986 GRCz11 DIRECT Farr et al., 2018
la028943Tg 3 53,640,863 - 53,640,873 Zv9 ZFIN_Zv9 BurgessLin
la028944Tg 3 53,704,425 - 53,704,435 Zv9 ZFIN_Zv9 BurgessLin
b557 3 GRCz11 GENERAL_LOAD load data [singleton]
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING linkagesDirectMem1
3 GRCz11 OTHER_MAPPING linkagesDirectMem2
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
hi933Tg 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
hi1126Tg 3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la028943Tg 3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
la028944Tg 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
scm14 3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGenePaneledMarkers
3 GRCz11 OTHER_MAPPING Feature location obtained from related gene that has mapped_marker info
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneGBrowse
3 GRCz11 OTHER_MAPPING featureLocationPullThruFromGeneLinkage

GENETIC MAPPING PANELS
Chr Location Mapped As Panel Mapped By Scoring
3 482.73 cR pbx4 Loeb/NIH/5000/4000 (LN54) Johnson, Stephen L. Data
Note: Physical map location as displayed in the genome browsers is more precise than linkage map location.
Physical map location should be used whenever possible.
MAPPING FROM PUBLICATIONS
Marker Type Chr Distance Publication / Person Comments
z17222 SSLP 3 Pöpperl et al., 2000 Pöpperl et al. (2000) Mol. Cell 6(2):255-267, report mapping the lazarus, (lzr) locus to LG3 between markers z3725 and z17222, using centromere-linkage analysis. They mapped lzr to a 0.18 cM interval containing the gene pbx4. Sequencing of lzr mutants led to the identification of the lzr locus with the pbx4 gene.
z3725 SSLP 3 Pöpperl et al., 2000 Pöpperl et al. (2000) Mol. Cell 6(2):255-267, report mapping the lazarus, (lzr) locus to LG3 between markers z3725 and z17222, using centromere-linkage analysis. They mapped lzr to a 0.18 cM interval containing the gene pbx4. Sequencing of lzr mutants led to the identification of the lzr locus with the pbx4 gene.
b557 Feature 3 Pöpperl et al., 2000 Pöpperl et al. (2000) Mol. Cell 6(2):255-267, report mapping the lazarus, (lzr) locus to LG3 between markers z3725 and z17222, using centromere-linkage analysis. They mapped lzr to a 0.18 cM interval containing the gene pbx4. Sequencing of lzr mutants led to the identification of the lzr locus with the pbx4 gene.
z3725 SSLP 3 24.0 cR Vlachakis et al., 2000 Vlachakis eta al. (2000, Dev. Dyn. 217(1):109-119) report mapping pbx4 to LG3 using z3725.

OTHER MAPPING INFORMATION
Chr 3 Pöpperl et al., 2000 Pöpperl et al. (2000) Mol. Cell 6(2):255-267, report mapping the lazarus, (lzr) locus  ...
Markers Encoded by pbx4
fb77e11 Chr: 3 Details
Genomic Feature b557 is an allele of pbx4
Marker Type Chr Distance Publication / Person Comments
pbx4 GENE 3 Pöpperl et al., 2000 Pöpperl et al. (2000) Mol. Cell 6(2):255-267, report mapping the lazarus, (lzr) locus to LG3 between markers z3725 and z17222, using centromere-linkage analysis. They mapped lzr to a 0.18 cM interval containing the gene pbx4. Sequencing of lzr mutants led to the identification of the lzr locus with the pbx4 gene.
z17222 SSLP 3 Pöpperl et al., 2000 Pöpperl et al. (2000) Mol. Cell 6(2):255-267, report mapping the lazarus, (lzr) locus to LG3 between markers z3725 and z17222, using centromere-linkage analysis. They mapped lzr to a 0.18 cM interval containing the gene pbx4. Sequencing of lzr mutants led to the identification of the lzr locus with the pbx4 gene.
z3725 SSLP 3 Pöpperl et al., 2000 Pöpperl et al. (2000) Mol. Cell 6(2):255-267, report mapping the lazarus, (lzr) locus to LG3 between markers z3725 and z17222, using centromere-linkage analysis. They mapped lzr to a 0.18 cM interval containing the gene pbx4. Sequencing of lzr mutants led to the identification of the lzr locus with the pbx4 gene.
Genomic Feature b557 is an allele of pbx4
Chr 3 Pöpperl et al., 2000 Pöpperl et al. (2000) Mol. Cell 6(2):255-267, report mapping the lazarus, (lzr) locus  ...
Genomic Feature hi933Tg is an allele of pbx4