Genomic Feature

ecn6

ID
ZDB-ALT-211116-3
Name
ecn6
Synonyms
None
Affected Genomic Region
Construct
None
Type
Allele with one delins (1)
Protocol
embryos treated with
Lab of Origin
Zhen-Yu Du Lab
Current Source
China Zebrafish Resource Center (CZRC)    ( order this )
Other Pages
Notes
No data available
Genome Browser
Genome Build: GRCz11Chromosome: 11
Variants
Variant Type
Delins
Variant Location
Chr 11: 638475 - 638507 (GRCz11) (1) Details
Nucleotide change
ACGTTTGGCTGGCCCGTGGGCTTCGGCCTGAGC/ACGCAGACGTTTGGCTGGCCCGTGGGCTTCGGCTGAG
Variant Notes
Between the 16bp and 48bp of the wild-type pparg coding sequence,  ...
Effect on DNA/cDNA, transcript, protein (from publications)
DNA/cDNA Change
37 bp inserted / 33 bp deleted in Exon 2 (1)
Transcript Consequence
None
Protein Consequence
None
Sequences
Flanking Sequence
ACCATTTTTTACTACTTCCTATTATATATATATATCTGTTTCTCGATGGATGGAAATGCTGCTTTATTCTCCCATGTTTTATGCAATATTCCAGATTCACGCATACATCTAATGCATCTTTAGATGGAAACAGCCATTTTCACAGGTTTTTTGATGCACAAAACAAAATGCTTTGGAGTAGTAGTTGTTTAGTTGTGTTGTGTAGTTGTGTGTGTGTGTGTGTGTGTGTGTGCTTACTCTGTATCTGCTGTGCTCTGTATGTGTTCTCCTCAGGGCTGTAGCTGCTGTGTTCTGGCCTGTAGATGGGCTCGTGTGTCCTGTAGTTCTCCTGTGTCCTGTAAGCTGTACATGTGCGTCAGGTCCATCATGTGCGGGGTTGGGTCGTTCTGTGTTGGGTTGTTCTCGTAGTCGATGCCTGATATGCTGCTGTAGTCGAGCGTGGAGAAGGGCTTGATGTCCAGCGAGTGCGTGTCGTCCTCCAGCTCCTCCAGTTCCAGAGC
ACGTTTGGCTGGCCCGTGGGCTTCGGCCTGAGC/ACGCAGACGTTTGGCTGGCCCGTGGGCTTCGGCTGAG CTGCGTGTCCACCATATCTGACGAACAACACAGAGAAAATCGAATAAACAACACCGCAAAAATACACAATTCTTACAACAAATCAATTGTTTTGTGCTTAATCCACTTATATTAGTAAAAATGATCAACCCTTGGGTGCTGTTGGGTCATTTTCATCCTCTCTTTTGAGTCTTAATTTGGCCACAGGCCACATGGAGAACATTCAAACTCCAGATAGAAATGCCCACTGGCCCAGTCGGGACTCAAACCAGCGACCTTCTTGCTGTGAGGGGATAGTGCTAACCACTGAGCCACCTTGCCACTCTTATTCACAGTGTTTCCTATTTTATTTTTCTTCAGGAGACAGTCTTGCTTTTTTTAGTCTGACAGGTAGAAATAAATAATATTATTTAAAATATATATGTTTAAAAATATTATAGAAGATATAACATATTATTAATATCAACCATATAACATCTTAATTTTTTTGTTTGATTAAATATTTTAAAAAATTAACAAGA
Additional Sequence
None
Fish
Fish Genomic Feature Zygosity Parental Zygosity Affected Genomic Regions Phenotype Gene Expression
ppargecn6/ecn6 (AB)Homozygous♀+/- ♂+/-5 figures from Wang et al., 20224 figures from Wang et al., 2022
1 - 1 of 1
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Supplemental Information
Genotyping protocol
None
Citations
TSV
1 - 1 of 1
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