Gene

vtg3

ID

ZDB-GENE-991019-2

Name

vitellogenin 3, phosvitinless

Symbol

vtg3 Nomenclature History

Previous Names

vg3
cb1001 (1)
wu:fb58g02 (1)
wu:fb59f05
wu:fb61d01 (1)

Type

protein_coding_gene

Location

Chr: 11 Mapping Details/Browsers

Description

Predicted to have lipid transporter activity. Involved in cellular response to estrogen stimulus. Is expressed in several structures, including axis; digestive system; hatching gland; ovary; and sensory system.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

24 figures from 13 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb1001 (10 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 6 figures from Yilmaz et al., 2019
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With vtg3 Human Ortholog

No data available

Associated With vtg3 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR001747	Vitellogenin, N-terminal
Domain	IPR015255	Vitellinogen, open beta-sheet
Domain	IPR015258	Vitellinogen, beta-sheet shell
Family	IPR050733	Vitellogenin/Apolipophorin
Homologous_superfamily	IPR011030	Lipovitellin-phosvitin complex, superhelical domain
Homologous_superfamily	IPR015816	Vitellinogen, beta-sheet N-terminal
Homologous_superfamily	IPR015817	Vitellinogen, open beta-sheet, subdomain 1
Homologous_superfamily	IPR015819	Lipid transport protein, beta-sheet shell
Homologous_superfamily	IPR037088	Vitellinogen, beta-sheet shell domain superfamily

Domain Details Per Protein

Protein	Length	Lipid transport protein, beta-sheet shell	Lipovitellin-phosvitin complex, superhelical domain	Vitellinogen, beta-sheet N-terminal	Vitellinogen, beta-sheet shell	Vitellinogen, beta-sheet shell domain superfamily	Vitellinogen, open beta-sheet	Vitellinogen, open beta-sheet, subdomain 1	Vitellogenin/Apolipophorin	Vitellogenin, N-terminal
UniProtKB:F1QQQ3 InterPro	1253

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	vtg3-201 (1) Ensembl	Ensembl	4,246 nt	Select Tool ZFIN BLAST
mRNA	vtg3-202 (1) Ensembl	Ensembl	4,182 nt	Select Tool ZFIN BLAST
ncRNA	vtg3-002 (1) Ensembl	Ensembl	490 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-vtg3	polyclonal	vtg3	IgG	Rabbit	WB		1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations