ZFIN is now using GRCz12tu for Genomic Data
Gene
cpeb1b
- ID
- ZDB-GENE-990927-1
- Name
- cytoplasmic polyadenylation element binding protein 1b
- Symbol
- cpeb1b Nomenclature History
- Previous Names
-
- cepb1b
- fd15c06
- wu:fd15c06 (1)
- zorba
- Type
- protein_coding_gene
- Location
- Chr: 7 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Enables RNA binding activity. Predicted to be involved in several processes, including cellular response to hypoxia; cellular response to insulin stimulus; and regulation of primary metabolic process. Predicted to act upstream of or within mRNA processing and regulation of translation. Part of protein-containing complex. Is expressed in blastomere; germ line cell; nervous system; and notochord. Orthologous to human CPEB1 (cytoplasmic polyadenylation element binding protein 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 9 figures from 3 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:55829 (13 images)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR000504 | RNA recognition motif domain |
| Domain | IPR032292 | Cytoplasmic polyadenylation element-binding protein 1, N-terminal |
| Domain | IPR032296 | Cytoplasmic polyadenylation element-binding protein, ZZ domain |
| Domain | IPR034977 | CPEB-1, RNA recognition motif 1 |
| Family | IPR034819 | Cytoplasmic polyadenylation element-binding protein |
| Homologous_superfamily | IPR012677 | Nucleotide-binding alpha-beta plait domain superfamily |
| Homologous_superfamily | IPR035979 | RNA-binding domain superfamily |
| Homologous_superfamily | IPR038446 | CEBP, ZZ domain superfamily |
Domain Details Per Protein
| Protein | Additional Resources | Length | CEBP, ZZ domain superfamily | CPEB-1, RNA recognition motif 1 | Cytoplasmic polyadenylation element-binding protein | Cytoplasmic polyadenylation element-binding protein 1, N-terminal | Cytoplasmic polyadenylation element-binding protein, ZZ domain | Nucleotide-binding alpha-beta plait domain superfamily | RNA-binding domain superfamily | RNA recognition motif domain |
|---|---|---|---|---|---|---|---|---|---|---|
| UniProtKB:Q9YGX5 | InterPro | 559 | ||||||||
| UniProtKB:A0A8M9Q7I0 | InterPro | 554 | ||||||||
| UniProtKB:A2CE67 | InterPro | 559 | ||||||||
| UniProtKB:A0AB32TRZ9 | InterPro | 563 | ||||||||
| UniProtKB:A0AB32TS95 | InterPro | 563 | ||||||||
| UniProtKB:A0AB32TTM2 | InterPro | 558 | ||||||||
| UniProtKB:A0AB32TWB0 | InterPro | 567 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
cpeb1b-201
(1)
|
Ensembl | 663 nt | ||
| mRNA |
cpeb1b-202
(1)
|
Ensembl | 2,912 nt | ||
| ncRNA |
cpeb1b-003
(1)
|
Ensembl | 965 nt | ||
| ncRNA |
cpeb1b-004
(1)
|
Ensembl | 763 nt |
Interactions and Pathways
No data available
| Name | Type | Antigen Genes | Isotype | Host Organism | Assay | Source | Citations |
|---|---|---|---|---|---|---|---|
| Ab1-cpeb1b | polyclonal | Rabbit |
|
3 |
Plasmids
No data available
- Genome Browsers