Gene

zgc:172282

ID

ZDB-GENE-080219-38

Name

zgc:172282

Symbol

zgc:172282 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 15 Mapping Details/Browsers

Description

Predicted to localize to cell junction; integral component of membrane; and synapse.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With zgc:172282 Human Ortholog

No data available

Associated With zgc:172282 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000483	Cysteine-rich flanking region, C-terminal
Domain	IPR003598	Immunoglobulin subtype 2
Domain	IPR003599	Immunoglobulin domain subtype
Domain	IPR003961	Fibronectin type III
Domain	IPR007110	Immunoglobulin-like domain
Family	IPR050467	Leucine-rich repeat and fibronectin type-III domain-containing
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
Homologous_superfamily	IPR036179	Immunoglobulin-like domain superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR003591	Leucine-rich repeat, typical subtype

Domain Details Per Protein

Protein	Length	Cysteine-rich flanking region, C-terminal	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin domain subtype	Immunoglobulin-like domain	Immunoglobulin-like domain superfamily	Immunoglobulin-like fold	Immunoglobulin subtype 2	Leucine-rich repeat	Leucine-rich repeat and fibronectin type-III domain-containing	Leucine-rich repeat domain superfamily	Leucine-rich repeat, typical subtype
UniProtKB:A8WGA3 InterPro	687
UniProtKB:A0A0R4IQF5 InterPro	687

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	zgc:172282-201 (1) Ensembl	Ensembl	2,850 nt	Select Tool
mRNA	zgc:172282-202 (1) Ensembl	Ensembl	2,994 nt	Select Tool ZFIN BLAST
mRNA	zgc:172282-203 (1) Ensembl	Ensembl	2,353 nt	Select Tool ZFIN BLAST
mRNA	zgc:172282-204 (1) Ensembl	Ensembl	2,866 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations