Gene
smtnb
- ID
- ZDB-GENE-070912-2
- Name
- smoothelin b
- Symbol
- smtnb Nomenclature History
- Previous Names
-
- smtn
- Type
- protein_coding_gene
- Location
- Chr: 5 Mapping Details/Browsers
- Description
- Is expressed in gut and swim bladder. Orthologous to human SMTN (smoothelin).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 2 figures from 2 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
- No data available
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
No data available
No data available
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Calponin homology domain | CH domain superfamily | F-actin Monooxygenase Mical | Smoothelin |
|---|---|---|---|---|---|---|
| UniProtKB:A0A8M9PLM4 | InterPro | 909 | ||||
| UniProtKB:A0A8M9Q505 | InterPro | 744 | ||||
| UniProtKB:A0A8M9Q9X3 | InterPro | 910 | ||||
| UniProtKB:A0A8M9Q9X6 | InterPro | 394 | ||||
| UniProtKB:A0A8M9QEZ1 | InterPro | 914 |
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Interactions and Pathways
No data available
Plasmids
No data available
| Relationship | Marker Type | Marker | Accession Numbers | Citations |
|---|---|---|---|---|
| Contained in | BAC | CH73-243G21 | ZFIN Curated Data |
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| Type | Accession # | Sequence | Length (nt/aa) | Analysis |
|---|---|---|---|---|
| RNA | RefSeq:XM_068221575 (1) | 4632 nt | ||
| Genomic | GenBank:CU463315 (1) | 104542 nt | ||
| Polypeptide | UniProtKB:A0A8M9QEZ1 (1) | 914 aa |
- Hachimi, M., Grabowski, C., Campanario, S., Herranz, G., Baonza, G., Serrador, J.M., Gomez-Lopez, S., Barea, M.D., Bosch-Fortea, M., Gilmour, D., Bagnat, M., Rodriguez-Fraticelli, A.E., Martin-Belmonte, F. (2020) Smoothelin-like 2 Inhibits Coronin-1B to Stabilize the Apical Actin Cortex during Epithelial Morphogenesis. Current biology : CB. 31(4):696-706.e9
- Elkon, R., Milon, B., Morrison, L., Shah, M., Vijayakumar, S., Racherla, M., Leitch, C.C., Silipino, L., Hadi, S., Weiss-Gayet, M., Barras, E., Schmid, C.D., Ait-Lounis, A., Barnes, A., Song, Y., Eisenman, D.J., Eliyahu, E., Frolenkov, G.I., Strome, S.E., Durand, B., Zaghloul, N.A., Jones, S.M., Reith, W., Hertzano, R. (2015) RFX transcription factors are essential for hearing in mice. Nature communications. 6:8549
- Gallagher, T.L., Arribere, J.A., Geurts, P.A., Exner, C.R., McDonald, K.L., Dill, K.K., Marr, H.L., Adkar, S.S., Garnett, A.T., Amacher, S.L., and Conboy, J.G. (2011) Rbfox-regulated alternative splicing is critical for zebrafish cardiac and skeletal muscle functions. Developmental Biology. 359(2):251-61
- Zeng, L., Carter, A.D., and Childs, S.J. (2009) miR-145 directs intestinal maturation in zebrafish. Proceedings of the National Academy of Sciences of the United States of America. 106(42):17793-17798
- Georgijevic, S., Subramanian, Y., Rollins, E.L., Starovic-Subota, O., Tang, A.C., Childs, S.J. (2007) Spatiotemporal expression of smooth muscle markers in developing zebrafish gut. Developmental Dynamics : an official publication of the American Association of Anatomists. 236(6):1623-1632
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