ZFIN ID: ZDB-GENE-041114-175
Gene Name: PCF11 cleavage and polyadenylation factor subunit
Gene Symbol: pcf11    Nomenclature History

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Previous Names: im:6912257, im:7138745 (1), wu:fc47a05, zgc:175013, zgc:92226

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 21 Mapping Details/Browsers
Description: Predicted to have RNA polymerase II complex binding activity and mRNA binding activity. Involved in regulation of DNA-templated transcription, termination. Predicted to localize to cytoplasm and mRNA cleavage factor complex. Orthologous to human PCF11 (PCF11 cleavage and polyadenylation factor subunit).
Genome Resources: Alliance (1),  Gene:492341 (1),  Ensembl(GRCz11):ENSDARG00000044625 (1)
GENE EXPRESSION
Directly Submitted Expression Data: 1 figure (1 image) from Thisse et al., 2004 [IMAGE:6912257]
  1 figure (1 image) from Thisse et al., 2004 [IMAGE:7138745]
Wild-type Stages, Structures: Zygote:1-cell (0.0h-0.75h) to Hatching:Pec-fin (60.0h-72.0h)
 
High Throughput Expression: GEO (1) Expression Atlas (1)
DISEASE ASSOCIATED WITH pcf11 HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH pcf11 VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process intracellular protein transport (more)
Cellular Component cytoplasm (more)
Molecular Function mRNA binding (more)
GO Terms (all 7)
PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
TRANSCRIPTS
Type Name Length (nt) Analysis
mRNA pcf11-201 (1)    Ensembl 4971
ncRNA pcf11-002 (1)    Ensembl 747
Browsers: UCSCNCBIEnsemblZFIN
INTERACTIONS AND PATHWAYS
ANTIBODIES No data available
PLASMIDS No data available
CONSTRUCTS WITH SEQUENCES FROM pcf11 No data available
MARKER RELATIONSHIPS
pcf11 Contained in: [BAC] CH73-115D3 (1), RP71-1P14
pcf11 Encodes: [EST] fc47a05 (1), IMAGE:6912257 (1), IMAGE:7138745 (1)
[cDNA] MGC:92226 (1), MGC:175013 (1)
SEQUENCE INFORMATION
Type Accession # Length (nt/aa) Analysis
RNA RefSeq:NM_001007307 (1) 4982 nt
Genomic GenBank:AL627325 163882 nt
Select Tool
Polypeptide UniProtKB:F1QGD0 (1) 1457 aa
Sequence Information (all 22)
ORTHOLOGY for pcf11 ( Chr: 21 )
CITATIONS (21)