Gene

rbfox1l

ID

ZDB-GENE-040923-2

Name

RNA binding fox-1 homolog 1, like

Symbol

rbfox1l Nomenclature History

Previous Names

a2bp1l
Fox-1 (1)
hm:zeh0082
zeh0082
ZFmu1A11s (1)

Type

protein_coding_gene

Location

Chr: 16 Mapping Details/Browsers

Description

Exhibits RNA binding activity. Involved in several processes, including RNA splicing; muscle fiber development; and regulation of RNA splicing. Localizes to nucleus. Is expressed in several structures, including cardiovascular system; fin bud; musculature system; paraxial mesoderm; and skeletal muscle satellite cell.

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

12 figures from 7 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: 4 figures from 2 publications
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With rbfox1l Human Ortholog

No data available

Associated With rbfox1l Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR025670	Fox-1 C-terminal domain
Domain	IPR034237	FOX1, RNA recognition motif
Family	IPR017325	RNA binding protein fox-1 homolog 1-3
Family	IPR047131	RNA binding protein fox-1 homolog 1-like
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Fox-1 C-terminal domain	FOX1, RNA recognition motif	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA binding protein fox-1 homolog 1-3	RNA binding protein fox-1 homolog 1-like	RNA recognition motif domain
UniProtKB:A0A8M9P7V7 InterPro	217
UniProtKB:A0A8M2B4J5 InterPro	370
UniProtKB:Q7ZT82 InterPro	382
UniProtKB:B3DK66 InterPro	382

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	rbfox1l-201 (1) Ensembl	Havana	2205 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	rbfox1l-002 (1) Ensembl	Havana	624 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-rbfox1l	polyclonal	rbfox1l		Rabbit	IHC		4

Plasmids

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations