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ZIRC
ZFIN ID: ZDB-GENE-040614-2
Gene Name: intraflagellar transport 20 homolog (Chlamydomonas)
Gene Symbol: ift20    Nomenclature History

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Previous Name: zgc:103674

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 15 Mapping Details/Browsers
Description: Predicted to be involved in several processes, including centrosome localization; intraciliary transport; and regulation of platelet-derived growth factor receptor-alpha signaling pathway. Localizes to the axoneme and ciliary basal body. Is expressed in head and retina. Orthologous to human IFT20 (intraflagellar transport 20).
Genome Resources: Alliance (1),  Gene:414930 (1),  Ensembl(GRCz11):ENSDARG00000040556 (2)
GENE EXPRESSION
All Expression Data: 3 figures from 3 publications
Wild-type Stages, Structures: Pharyngula:Prim-5 (24.0h-30.0h) to Adult (90d-730d, breeding adult)
 
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la027619Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-ift20 N/A 2
    DISEASE ASSOCIATED WITH ift20 HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH ift20 VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process intraciliary transport (more)
    Cellular Component axoneme (more)
    GO Terms (all 17)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR028172 (1)
  • Pfam:PF14931 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA ift20-202 (1)    Ensembl 1104
    ncRNA ift20-002 (1)    Ensembl 818
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-ift20 polyclonal Rabbit 2
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM ift20 No data available
    MARKER RELATIONSHIPS
    ift20 Contained in: [BAC] CH211-167J9 (order this)
    ift20 Encodes: [cDNA] MGC:103674 (1) (order this), MGC:192324 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001001833 (1) 1137 bp
    Genomic GenBank:CR848814 (1) 79851 bp
    Select Tool
    Polypeptide UniProtKB:A0A0R4I9H0 (1) 132 aa
    Sequence Clusters UniGene:31003 (1)
    Sequence Information (all 20)
    ORTHOLOGY for ift20 ( Chr: 15 )
    CITATIONS (26)