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ZIRC
ZFIN ID: ZDB-GENE-030131-9686
Gene Name: stem-loop binding protein
Gene Symbol: slbp    Nomenclature History

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Previous Names: cb157 (1), sb:cb157 (1), si:dkey-102m7.2 (1)

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 14 Mapping Details/Browsers
Description: Predicted to have histone pre-mRNA stem-loop binding activity and mRNA binding activity. Involved in neural retina development; photoreceptor cell differentiation; and retinal ganglion cell axon guidance. Predicted to localize to the cytoplasm and histone pre-mRNA 3'end processing complex. Is expressed in several structures, including alar plate midbrain region; immature eye; nervous system; pectoral fin musculature; and proliferative region. Orthologous to human SLBP (stem-loop binding protein).
Genome Resources: Alliance (1),  Gene:407727 (1),  Ensembl(GRCz11):ENSDARG00000100558 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
ihb494 Small Deletion Exon 6 Unknown CRISPR
la012500Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • rw440 Point Mutation Unknown Premature Stop ENU
    Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    CRISPR1-slbp 1
    MO1-slbp N/A 1
    DISEASE ASSOCIATED WITH slbp HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH slbp VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process neural retina development (more)
    Cellular Component cytoplasm (more)
    Molecular Function mRNA binding (more)
    GO Terms (all 11)
    PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR026502 (1)
  • InterPro:IPR029344 (1)
  • InterPro:IPR038294 (1)
  • Pfam:PF15247 (1)
  • TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA slbp-201 (1)    Ensembl 1331
    slbp-202 (1)    Ensembl 985
    ncRNA slbp-003 (1) 645
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM slbp No data available
    MARKER RELATIONSHIPS
    slbp Contained in: [BAC] DKEY-102M7 (1) (order this)
    slbp Encodes: [EST] cb157 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001256193 (1) 1325 bp
    Genomic GenBank:BX323828 (1) 206011 bp Blast at MegaBLAST
    Polypeptide UniProtKB:A0A0R4IVR7 (1) 302 aa
    Sequence Clusters UniGene:84074 (1)
    Sequence Information (all 17)
    ORTHOLOGY for slbp ( Chr: 14 )
    CITATIONS (26)