Gene

ybx1

ID
ZDB-GENE-000629-3
Name
Y box binding protein 1
Symbol
ybx1 Nomenclature History
Previous Names
  • yb1
  • hm:zeh0308
  • nsep1 (1)
  • wu:fb01g10 (1)
  • wu:fb08c05 (1)
  • wu:fb16e10
  • wu:fj26c09 (1)
  • Y-box binding protein 1
  • zfY1 (1)
  • zgc:85599
Type
protein_coding_gene
Location
Chr: 8 Mapping Details/Browsers
Description
Exhibits C5-methylcytidine-containing RNA binding activity and eukaryotic initiation factor 4E binding activity. Involved in several processes, including establishment of RNA localization; negative regulation of mRNA metabolic process; and negative regulation of translational initiation. Localizes to nucleus. Is expressed in eye. Orthologous to several human genes including YBX1 (Y-box binding protein 1).
Genome Resources
Note
None
Expression
All Expression Data
10 figures from 7 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
13 figures from 3 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With ybx1 Human Ortholog
No data available
Associated With ybx1 Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR002059 Cold-shock protein, DNA-binding
Domain IPR011129 Cold shock domain
Domain IPR019844 Cold-shock (CSD) domain
Homologous_superfamily IPR012340 Nucleic acid-binding, OB-fold
Domain Details Per Protein
Protein Length Cold-shock (CSD) domain Cold shock domain Cold-shock protein, DNA-binding Nucleic acid-binding, OB-fold
UniProtKB:A8KBS6 237
UniProtKB:B5DE31 310
Transcripts
Genome Browsers
Interactions and Pathways
No data available
Antibodies
Name Type Antigen Genes Isotype Host Organism Assay Source Citations
Ab2-ybx1 polyclonal IgG Rabbit
  • IHC
  • WB
Abcam plc
3
Ab3-ybx1 monoclonal IgG , k Mouse
  • IHC
  • WB
Santa Cruz Biotechnology, Inc.
2
Ab4-ybx1 polyclonal Rabbit
  • IHC
Sigma-Aldrich
3
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Gene Tree
Ensembl
Citations