ZFIN ID: ZDB-GENE-000329-2
Gene Name: homeobox B7a
Gene Symbol: hoxb7a    Nomenclature History

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Previous Names: hoxb7, fc39g02, wu:fc39g02, z-139

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 3 Mapping Details/Browsers
Description: Predicted to have RNA polymerase II distal enhancer sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification. Predicted to localize to the nucleus. Is expressed in central nervous system; mesoderm; neural tube; somite; and tail bud. Orthologous to human HOXB7 (homeobox B7).
Genome Resources: Alliance (1),  Gene:58044 (1),  Ensembl(GRCz11):ENSDARG00000056030 (1)
GENE EXPRESSION
All Expression Data: 10 figures from 9 publications
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Pharyngula:Prim-5 (24.0h-30.0h)
 
Curated Microarray Expression: GEO (1) , Expression Atlas (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
la015134Tg Transgenic Insertion Unknown Unknown DNA
  • Zebrafish International Resource Center (ZIRC) (order this)
  • Sequence Targeting Reagents
    Targeting Reagent Created Alleles Publications
    MO1-hoxb7a N/A 1
    DISEASE ASSOCIATED WITH hoxb7a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH hoxb7a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process multicellular organism development (more)
    Cellular Component nucleus (more)
    Molecular Function DNA binding (more)
    GO Terms (all 9)
    PROTEIN FAMILIES, DOMAINS AND SITES
    Type InterPro ID Name
    Conserved_site IPR001827 Homeobox protein, antennapedia type, conserved site
    Conserved_site IPR017970 Homeobox, conserved site
    Domain IPR001356 Homeobox domain
    Domain IPR020479 Homeobox domain, metazoa
    Family IPR017995 Homeobox protein, antennapedia type
    Homologous_superfamily IPR009057 Homeobox-like domain superfamily
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA hoxb7a-201 (1)    Ensembl 903
    hoxb7a-203 (1)    Ensembl 487
    ottdart00000001815 (1) 1337
    ncRNA hoxb7a-002 (1) 865
    hoxb7a-003 (1) 832
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES No data available
    PLASMIDS
    Addgene:Hox B7a
    CONSTRUCTS WITH SEQUENCES FROM hoxb7a No data available
    MARKER RELATIONSHIPS
    hoxb7a Contained in: [BAC] CH211-72A16 (1)
    [PAC] BUSM1-254O17 (1)
    hoxb7a Encodes: [EST] fc39g02
    [cDNA] MGC:194760 (1), MGC:194765 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001115091 (1) 1258 nt
    Genomic GenBank:BX927395 (1) 152987 nt
    Select Tool
    Polypeptide UniProtKB:B3DJ48 (1) 227 aa
    Sequence Information (all 24)
    ORTHOLOGY for hoxb7a ( Chr: 3 )
    CITATIONS (50)