Genomic Feature
x52
Notes
No data available
Variants
- Variant Type
- Small Deletion
- Variant Location
- Chr 14: 32744184 - 32744187 (GRCz11) (1) Details
- Nucleotide change
- TCGT/-
- Variant Notes
- None
Effect on DNA/cDNA, transcript, protein (from publications)
- DNA/cDNA Change
- 4 bp deleted (1)
- Transcript Consequence
- Frameshift, Premature Stop (1)
- Protein Consequence
- None
- Flanking Sequence
-
AGGTCTGAGCCGTGGACATCATTGGGTACTGAAGTCCCGCCATGTCGTACCGGTGCATCTGCTGGATCTGGGGGCTGTTCATGCTGGGATGTTGAGGGTAGGCCAGCTGGTCCTGCATGAGGGAGTATGCGCTGTTCGTCCATCCGTTCATGTGCGTGTAGTCCATCCGCTGGCCCACCGACACCGCGTTGTTGACAGCGTTGGCACCGGGCGCCAGGAGTCCCCCTGGCAAAGAATACTTGTCTTTCTTCAGCAGGGTCTTGGTCTTCCTGCGGGGACGGTATTTGTAATCCGGGTGCTCCTTCATGTGCATGGCTCGTAACCGCTTGGCCTCGTCAATGAAGGGTCTCTTCTCGGCGTCAGTCAAAAGTTTCCAGTCAGCACCGAGGCGCTTGCTGATCTCCGAGTTGTGCATTTTAGGATTCTCCTGAGCCATCTTCCTCCGCTGCCCGCGAGACCACACCATGAAAGCATTCATAGGCCGCTTCACCCGGTCCTGG
TCGT/- TGGCACTGTTGTTTTTGCCGCCCGTCACCGAGCCCGTGTTGGACTGCGGAATGGGGCTTTTAATCTCGGTTTCCATCATGTTATACATTCTTAAAAGTGGTGCCAAGCACTCGAAAGAAAACGTTGAAATTTCAAGAGTCTCACAAAAAAATGAAGTCAGTCAAAAGTTCAGAGAGCTCAAACTCTGGTCAAGTAAAGTCTTTCAAAAGTCTCCACAACAGTGCCGTGTGTCTCGTTCTGCTCTGCCACGGAACTCTGCAAAGTTGTGCGCTAAGCTCAGCTGTTAATAGAGCCTCGGCCATGTGATTTGGATTGACAGCATAACAATGAGCTAAAGCCGACCAATCAGACAGCACCTCACACTCCTCCATCGCAAGTGTAGGGCTGCCTGTGCACCAGTGTTTCTGGATGCACTTTAAATTGGGATAAAATAGCTACATCAGGGACATCTTTGCACTTTAACAAAACTATAGTCACTCTGGAAACGCTGCTTCAAAGCG - Additional Sequence
- None
Fish
| Fish | Genomic Feature Zygosity | Parental Zygosity | Affected Genomic Regions | Phenotype | Gene Expression |
|---|---|---|---|---|---|
| sox3x52/x52 (AB) | Homozygous | ♀+/- ♂+/- | 2 figures  from 2 publications | 3 figures from Gou et al., 2018 | |
| sox3x52/x52; pax8nia03Gt/nia03Gt (AB) | Complex | Fig. 5 from Gou et al., 2018 | |||
| sox2x50/x50; sox3x52/x52 (AB) | Complex | Fig. 2 from Gou et al., 2018 | 2 figures from Gou et al., 2018 |
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Supplemental Information
- Genotyping protocol
- None
- Gou, Y., Guo, J., Maulding, K., Riley, B.B. (2018) sox2 and sox3 cooperate to regulate otic/epibranchial placode induction in zebrafish. Developmental Biology. 435(1):84-95
- Gou, Y., Vemaraju, S., Sweet, E.M., Kwon, H.J., Riley, B.B. (2018) sox2 and sox3 play unique roles in development of hair cells and neurons in the zebrafish inner ear. Developmental Biology. 435(1):73-83
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