Gene

ldb1a

ID

ZDB-GENE-990415-138

Name

LIM domain binding 1a

Symbol

ldb1a Nomenclature History

Previous Names

ldb4 (1)

Type

protein_coding_gene

Location

Chr: 13 Mapping Details/Browsers

Description

Exhibits LIM domain binding activity. Predicted to be involved in multicellular organism development; negative regulation of transcription by RNA polymerase II; and positive regulation of transcription by RNA polymerase II. Localizes to nucleus. Is expressed in several structures, including eye; gill; heart; pleuroperitoneal region; and post-vent region. Orthologous to human LDB1 (LIM domain binding 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from 5 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

MGC:114025 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With ldb1a Human Ortholog

No data available

Associated With ldb1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR041363	LIM interaction domain
Family	IPR029005	LIM-domain binding protein/SEUSS

Domain Details Per Protein

Protein	Length	LIM-domain binding protein/SEUSS	LIM interaction domain
UniProtKB:F1R491 InterPro	352
UniProtKB:A0A8M3BEM2 InterPro	416
UniProtKB:A0A8M3AZ27 InterPro	354
UniProtKB:A0A8M3AZ24 InterPro	413
UniProtKB:A0A8M2B3N6 InterPro	381
UniProtKB:A0A8M2B3I2 InterPro	380
UniProtKB:A0A8M2B2T8 InterPro	376
UniProtKB:O73712 InterPro	374
UniProtKB:A0A2R8RV37 InterPro	352
UniProtKB:A0A8M6Z3Q7 InterPro	410
UniProtKB:A0A8M3BEM6 InterPro	357
UniProtKB:A0A8M3AZ48 InterPro	359
UniProtKB:A0A8M3B801 InterPro	411
UniProtKB:A0A8M6Z275 InterPro	412
UniProtKB:A0A8M9PXM7 InterPro	414
UniProtKB:A0A8M6Z9I1 InterPro	353
UniProtKB:A0A8M6Z933 InterPro	417
UniProtKB:O73715 InterPro	374
UniProtKB:A0A8M2B326 InterPro	418

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	ldb1a-201 (1) Ensembl	Ensembl	2,276 nt	Select Tool
mRNA	ldb1a-203 (1) Ensembl	Ensembl	2,986 nt	Select Tool
mRNA	ldb1a-204 (1) Ensembl	Ensembl	5,819 nt	Select Tool ZFIN BLAST
ncRNA	ldb1a-003 (1) Ensembl	Ensembl	419 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations