Gene

podxl

ID

ZDB-GENE-030131-2805

Name

podocalyxin-like

Symbol

podxl Nomenclature History

Previous Names

fc18d02
si:dkey-146n1.1
wu:fc18d02

Type

protein_coding_gene

Location

Chr: 4 Mapping Details/Browsers

Description

Involved in pronephric glomerulus morphogenesis. Predicted to localize to apical plasma membrane and microvillus membrane. Is expressed in cardiovascular system; hindbrain neural keel; pronephros; and yolk syncytial layer. Orthologous to human PODXL (podocalyxin like).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

18 figures from 6 publications

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

eu1088 (16 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: 4 figures from Ichimura et al., 2013
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With podxl Human Ortholog

No data available

Associated With podxl Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR013836	CD34/Podocalyxin
Family	IPR017403	Podocalyxin

Domain Details Per Protein

Protein	Length	CD34/Podocalyxin	Podocalyxin
UniProtKB:Q5RHU2 InterPro	445

Transcripts

Genome Browsers

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	podxl-201 (1) Ensembl	Ensembl		4,160 nt	Select Tool
mRNA	podxl-202 (1) Ensembl	Ensembl		766 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-podxl	polyclonal	podxl		Rabbit	IHC		1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations