ZFIN ID: ZDB-GENE-030131-2805
Gene Name: podocalyxin-like
Gene Symbol: podxl
Sequence Ontology ID : SO:0000704

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Previous Names: fc18d02, si:dkey-146n1.1, wu:fc18d02

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(Including Attributions)
Location: Chr: 4 Mapping Details/Browsers
Nomenclature History
AUTOMATED DESCRIPTION
Involved in pronephric glomerulus morphogenesis; predicted to localize to the apical plasma membrane, cell projection, and integral component of membrane; orthologous to human PODXL (podocalyxin  ...
GENE EXPRESSION
All Expression Data: 14 figures from 4 publications
Directly Submitted Expression Data: 6 figures (16 images) from Thisse et al., 2005 [eu1088]
Wild-type Stages, Structures: Segmentation:1-4 somites (10.33h-11.66h) to Larval:Day 4 (96.0h-120.0h)
 
Curated Microarray Expression: GEO (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Targeting reagents:
PHENOTYPE
Data: 4 figures from Ichimura et al., 2013
Observed in:
DISEASE ASSOCIATED WITH podxl HUMAN ORTHOLOG No data available
DISEASE ASSOCIATED WITH podxl VIA EXPERIMENTAL MODELS No data available
GENE ONTOLOGY
Ontology GO Term
Biological Process pronephric glomerulus morphogenesis (more)
Cellular Component apical plasma membrane (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR013836 (1)
  • InterPro:IPR017403 (1)
  • Pfam:PF06365 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA podxl-001 (1) 4160
    podxl-002 (1) 766
    GENE PRODUCT DESCRIPTION
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    PLASMIDSNo data available
    CONSTRUCTS WITH SEQUENCES FROM podxl
    MARKER RELATIONSHIPS
    podxlContained in: [BAC] DKEY-146N1 (1) (order this)
    podxlEncodes: [EST] eu1088 (1), fc18d02
    [cDNA] MGC:158122 (1) (order this), MGC:195019 (1) (order this), MGC:195035 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001045016 (1) 4227bp
    Genomic GenBank:BX465862 (1) 214562bp Blast at MegaBLAST
    Polypeptide UniProtKB:Q5RHU2 (1) 445aa
    Sequence Clusters UniGene:78276 (1)
    Sequence Information (all 27)
    OTHER podxl GENE PAGES
  • Alliance (1)
  • Gene:563365 (1)
  • VEGA:OTTDARG00000011091 (1)
  • Ensembl(GRCz11):ENSDARG00000031228 (2)
  • ORTHOLOGY for podxl (Chr: 4)
    CITATIONS (31)