Gene
vcam1b
- ID
- ZDB-GENE-070209-238
- Name
- vascular cell adhesion molecule 1b
- Symbol
- vcam1b Nomenclature History
- Previous Names
-
- vcam1
- fi76d06
- wu:fi76d06
- zgc:158875 (1)
- Type
- protein_coding_gene
- Location
- Chr: 22 Mapping Details/Browsers
- Description
- Involved in lymphangiogenesis. Predicted to localize to integral component of membrane. Human ortholog(s) of this gene implicated in hypertension. Is expressed in several structures, including basal plate midbrain region; cardiovascular system; central nervous system; periderm; and trunk. Orthologous to human VCAM1 (vascular cell adhesion molecule 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 9 figures from 4 publications
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- cssl:d127 (17 images)
Wild Type Expression Summary
- All Phenotype Data
- 3 figures from Li et al., 2018
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
| Type | InterPro ID | Name |
|---|---|---|
| Domain | IPR003598 | Immunoglobulin subtype 2 |
| Domain | IPR003599 | Immunoglobulin domain subtype |
| Domain | IPR007110 | Immunoglobulin-like domain |
| Domain | IPR013098 | Immunoglobulin I-set |
| Domain | IPR013151 | Immunoglobulin-like beta-sandwich domain |
| Family | IPR003989 | Vascular cell adhesion molecule-1 |
| Family | IPR047012 | Intercellular adhesion molecule/vascular cell adhesion molecule |
| Homologous_superfamily | IPR013783 | Immunoglobulin-like fold |
| Homologous_superfamily | IPR036179 | Immunoglobulin-like domain superfamily |
Domain Details Per Protein
| Protein | Length | Immunoglobulin domain subtype | Immunoglobulin I-set | Immunoglobulin-like beta-sandwich domain | Immunoglobulin-like domain | Immunoglobulin-like domain superfamily | Immunoglobulin-like fold | Immunoglobulin subtype 2 | Intercellular adhesion molecule/vascular cell adhesion molecule | Vascular cell adhesion molecule-1 |
|---|---|---|---|---|---|---|---|---|---|---|
|
UniProtKB:A5PMX0
|
808 | |||||||||
|
UniProtKB:A4JYI2
|
808 |
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
vcam1b-201
(1)
|
Ensembl | 3,475 nt | ||
| mRNA |
vcam1b-202
(1)
|
Ensembl | 5,261 nt | ||
| mRNA |
vcam1b-203
(1)
|
Ensembl | 5,522 nt |
Interactions and Pathways
No data available
Plasmids
No data available