Gene

apba1a

ID
ZDB-GENE-060526-175
Name
amyloid beta (A4) precursor protein-binding, family A, member 1a
Symbol
apba1a Nomenclature History
Previous Names
  • si:ch211-62b4.1
Type
protein_coding_gene
Location
Chr: 5 Mapping Details/Browsers
Description
Predicted to enable amyloid-beta binding activity. Predicted to be involved in chemical synaptic transmission. Predicted to be active in cytoplasm; dendritic spine; and plasma membrane. Orthologous to human APBA1 (amyloid beta precursor protein binding family A member 1).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
No data available
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
No data available
Wild Type Expression Summary
Phenotype
All Phenotype Data
No data available
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
No data available
Sequence Targeting Reagents
No data available
Human Disease
Associated With apba1a Human Ortholog
No data available
Associated With apba1a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001478 PDZ domain
Domain IPR006020 PTB/PI domain
Family IPR051230 Amyloid-beta A4 Precursor Protein-Binding
Homologous_superfamily IPR011993 PH-like domain superfamily
Homologous_superfamily IPR036034 PDZ superfamily
1 - 5 of 5
Domain Details Per Protein
Protein Length Amyloid-beta A4 Precursor Protein-Binding PDZ domain PDZ superfamily PH-like domain superfamily PTB/PI domain
UniProtKB:A0A0R4IUM3
InterPro
957
UniProtKB:A0A8M1Q7S5
InterPro
968
1 - 2 of 2
Transcripts
Genome Browsers
Genome Build: GRCz11Chromosome: 5
Type Name Annotation Method Has Havana Data Length (nt) Analysis
mRNA apba1a-201 (1)
Ensembl
Ensembl 6,492 nt
ZFIN BLAST
mRNA apba1a-202 (1)
Ensembl
Ensembl 757 nt
ZFIN BLAST
mRNA apba1a-203 (1)
Ensembl
Ensembl 3,382 nt
ZFIN BLAST
mRNA apba1a-204 (1)
Ensembl
Ensembl 2,292 nt
ZFIN BLAST
1 - 4 of 4
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
No data available
Marker Relationships
Relationship Marker Type Marker Accession Numbers Citations
Contained inBACCH211-62B4ZFIN Curated Data
Contained inBACCH211-117C19ZFIN Curated Data
1 - 2 of 2
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Sequences
Type Accession # Sequence Length (nt/aa) Analysis
RNARefSeq:XM_001343336 (1)3898 nt
ZFIN BLASTNCBI BLASTEnsemblUCSC BLAT
GenomicGenBank:BX470086 (1)190665 nt
MegaBLASTEnsembl
PolypeptideUniProtKB:A0A8M1Q7S5 (1)968 aa
ZFIN BLASTSIB BLASTEnsembl Protein Blast
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Species Symbol Chromosome Accession # Evidence
HumanAPBA19
Conserved genome location (synteny) (2)
Amino acid sequence comparison (1)
MouseApba119
Conserved genome location (synteny) (1)
Amino acid sequence comparison (1)
Citations
TSV
1 - 1 of 1
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