Gene

epyc

ID

ZDB-GENE-041008-9

Name

epiphycan

Symbol

epyc Nomenclature History

Previous Names

dspg3 (1)
dspg3l (1)
im:6901189
si:dkeyp-38g8.4
wu:fb48c08
zgc:110596

Type

protein_coding_gene

Location

Chr: 4 Mapping Details/Browsers

Description

Is expressed in cartilage element; notochord; otic vesicle; and splanchnocranium. Orthologous to human EPYC (epiphycan).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

8 figures from 3 publications

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Thisse Expression Data

IMAGE:6901189 (7 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With epyc Human Ortholog

No data available

Associated With epyc Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000372	Leucine-rich repeat N-terminal domain
Family	IPR043547	Mimecan/Epiphycan/Opticin
Homologous_superfamily	IPR032675	Leucine-rich repeat domain superfamily
Repeat	IPR001611	Leucine-rich repeat
Repeat	IPR003591	Leucine-rich repeat, typical subtype

Domain Details Per Protein

Protein	Length	Leucine-rich repeat	Leucine-rich repeat domain superfamily	Leucine-rich repeat N-terminal domain	Leucine-rich repeat, typical subtype	Mimecan/Epiphycan/Opticin
UniProtKB:B0S5X0 InterPro	712
UniProtKB:A0A8M1P5N0 InterPro	321

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	epyc-201 (1) Ensembl	Havana	1850 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
mRNA	epyc-203 (1) Ensembl	Havana	2226 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	epyc-003 (1) Ensembl	Havana	579 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
ncRNA	epyc-004 (1) Ensembl	Havana	893 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations