Gene

ldb3a

ID
ZDB-GENE-040121-6
Name
LIM domain binding 3a
Symbol
ldb3a Nomenclature History
Previous Names
  • ldb3
  • cypher (1)
  • hm:zehn1639
  • zasp (1)
  • zehn1639
Type
protein_coding_gene
Location
Chr: 13 Mapping Details/Browsers
Description
Predicted to have actin binding activity and muscle alpha-actinin binding activity. Involved in animal organ development; locomotory behavior; and somitogenesis. Predicted to localize to Z disc; actin cytoskeleton; and adherens junction. Human ortholog(s) of this gene implicated in dilated cardiomyopathy; dilated cardiomyopathy 1C; distal myopathy; and myofibrillar myopathy 4. Is expressed in several structures, including adaxial cell; intestine; musculature system; pericardial region; and sensory system. Orthologous to human LDB3 (LIM domain binding 3).
Genome Resources
Note
None
Comparative Information
Expression
All Expression Data
13 figures from 5 publications
Cross-Species Comparison
High Throughput Data
Thisse Expression Data
Wild Type Expression Summary
Phenotype
All Phenotype Data
6 figures from 2 publications
Cross-Species Comparison
Alliance
Phenotype Summary
Mutations
Mutants
Sequence Targeting Reagents
Human Disease
Associated With ldb3a Human Ortholog
Disease Ontology Term Multi-Species Data OMIM Term OMIM Phenotype ID
dilated cardiomyopathy 1C Alliance Cardiomyopathy, dilated, 1C, with or without LVNC 601493
dilated cardiomyopathy 1C Alliance Cardiomyopathy, hypertrophic, 24 601493
dilated cardiomyopathy 1C Alliance Left ventricular noncompaction 3 601493
myofibrillar myopathy 4 Alliance Myopathy, myofibrillar, 4 609452
Associated With ldb3a Via Experimental Models
No data available
Gene Ontology
Protein Domains
Domain, Family, and Site Summary
Type InterPro ID Name
Domain IPR001478 PDZ domain
Domain IPR001781 Zinc finger, LIM-type
Domain IPR006643 Zasp-like motif
Domain IPR031847 PDZ and LIM domain protein 1-4/Zasp-like, middle domain
Homologous_superfamily IPR036034 PDZ superfamily
Domain Details Per Protein
Protein Length PDZ and LIM domain protein 1-4/Zasp-like, middle domain PDZ domain PDZ superfamily Zasp-like motif Zinc finger, LIM-type
UniProtKB:Q7ZVD3 291
UniProtKB:A0A8M9Q9Y7 746
Transcripts
Genome Browsers
Type Name Annotation Method Length (nt) Analysis
aberrant processed transcript ldb3a-211 (1) Havana 1516 nt
mRNA ldb3a-201 (1) Havana 852 nt
mRNA ldb3a-202 (1) Havana 780 nt
mRNA ldb3a-203 (1) Havana 900 nt
mRNA ldb3a-204 (1) Havana 1322 nt
mRNA ldb3a-205 (1) Havana 4619 nt
mRNA ldb3a-206 (1) Havana 1791 nt
mRNA ldb3a-208 (1) Havana 777 nt
mRNA ldb3a-209 (1) Havana 1767 nt
mRNA ldb3a-210 (1) Havana 791 nt
mRNA ldb3a-212 (1) Havana 2119 nt
mRNA ldb3a-213 (1) Havana 856 nt
mRNA ldb3a-214 (1) Havana 925 nt
mRNA ldb3a-215 (1) Havana 911 nt
mRNA ldb3a-216 (1) Havana 867 nt
mRNA ldb3a-217 (1) Havana 880 nt
Interactions and Pathways
No data available
Antibodies
No data available
Plasmids
No data available
Constructs
Marker Relationships
Sequences
Orthology
Comparative Orthology
Alliance
Gene Tree
Ensembl
Citations