Gene

msi2a

ID

ZDB-GENE-030826-25

Name

musashi RNA-binding protein 2a

Symbol

msi2a Nomenclature History

Previous Names

msi2
cb746 (1)
fi47b09
wu:fb02d08 (1)
wu:fi32d12 (1)
wu:fi47b09 (1)

Type

protein_coding_gene

Location

Chr: 10 Mapping Details/Browsers

Description

Predicted to have RNA binding activity. Predicted to be involved in regulation of RNA metabolic process. Predicted to localize to cytoplasm; nucleus; and polysome. Is expressed in cranial ganglion; diencephalon; hindbrain; tegmentum; and telencephalon. Orthologous to human MSI2 (musashi RNA binding protein 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

5 figures from Thisse et al., 2001

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

cb746 (8 images)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With msi2a Human Ortholog

No data available

Associated With msi2a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000504	RNA recognition motif domain
Domain	IPR034126	RNA-binding protein Musashi homologue, RNA recognition motif 2
Homologous_superfamily	IPR012677	Nucleotide-binding alpha-beta plait domain superfamily
Homologous_superfamily	IPR035979	RNA-binding domain superfamily

Domain Details Per Protein

Protein	Length	Nucleotide-binding alpha-beta plait domain superfamily	RNA-binding domain superfamily	RNA-binding protein Musashi homologue, RNA recognition motif 2	RNA recognition motif domain
UniProtKB:Q7ZW10 InterPro	388
UniProtKB:A0A8M3AX32 InterPro	407

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	msi2a-201 (1) Ensembl	Ensembl	1,169 nt	Select Tool ZFIN BLAST
mRNA	msi2a-202 (1) Ensembl	Ensembl	2,259 nt	Select Tool
ncRNA	msi2a-002 (1) Ensembl	Ensembl	521 nt	Select Tool
ncRNA	msi2a-003 (1) Ensembl	Ensembl	493 nt	Select Tool
ncRNA	msi2a-004 (1) Ensembl	Ensembl	406 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations