Gene

csmd2

ID

ZDB-GENE-030616-39

Name

CUB and Sushi multiple domains 2

Symbol

csmd2 Nomenclature History

Previous Names

si:bz1c3.1
si:ch211-46o5.1

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Predicted to localize to integral component of membrane. Orthologous to human CSMD2 (CUB and Sushi multiple domains 2).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

1 figure from Thisse et al., 2004

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

IMAGE:7143158 (1 image)

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With csmd2 Human Ortholog

No data available

Associated With csmd2 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Domain	IPR000436	Sushi/SCR/CCP domain
Domain	IPR000859	CUB domain
Family	IPR051277	SEZ6/CSMD/C4BPB Neuronal & Immune Regulators
Homologous_superfamily	IPR035914	Spermadhesin, CUB domain superfamily
Homologous_superfamily	IPR035976	Sushi/SCR/CCP superfamily

Domain Details Per Protein

Protein	Length	CUB domain	SEZ6/CSMD/C4BPB Neuronal & Immune Regulators	Spermadhesin, CUB domain superfamily	Sushi/SCR/CCP domain	Sushi/SCR/CCP superfamily
UniProtKB:A0A8N7UT85 InterPro	3604

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	csmd2-201 (1) Ensembl	Ensembl	12,344 nt	Select Tool
mRNA	csmd2-203 (1) Ensembl	Ensembl	945 nt	Select Tool ZFIN BLAST
mRNA	csmd2-204 (1) Ensembl	Ensembl	771 nt	Select Tool ZFIN BLAST
mRNA	csmd2-205 (1) Ensembl	Ensembl	531 nt	Select Tool ZFIN BLAST
ncRNA	si:ch211-46o5.1-002 (1) Ensembl	Ensembl	308 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations