ZFIN is now using GRCz12tu for Genomic Data
Gene
smndc1
- ID
- ZDB-GENE-030131-614
- Name
- survival motor neuron domain containing 1
- Symbol
- smndc1 Nomenclature History
- Previous Names
- Type
- protein_coding_gene
- Location
- Chr: 17 Mapping Details/Browsers
- Genome Assembly
- GRCz12tu
- Annotation Status
- Current
- Description
- Predicted to enable RNA binding activity. Predicted to be involved in mRNA processing. Predicted to be located in nuclear speck. Predicted to be active in nucleus. Orthologous to human SMNDC1 (survival motor neuron domain containing 1).
- Genome Resources
- Note
- None
- Comparative Information
-
- All Expression Data
- 1 figure from Thisse et al., 2004
- Cross-Species Comparison
- High Throughput Data
- Thisse Expression Data
-
- MGC:56173 (1 image)
Wild Type Expression Summary
- All Phenotype Data
- No data available
- Cross-Species Comparison
- Alliance
Phenotype Summary
Mutations
Human Disease
Domain, Family, and Site Summary
Domain Details Per Protein
| Protein | Additional Resources | Length | Survival motor neuron, Tudor domain | Tudor domain |
|---|---|---|---|---|
| UniProtKB:Q7ZV80 | InterPro | 237 | ||
| UniProtKB:B2GRC5 | InterPro | 237 | ||
| UniProtKB:A0AC58HNL0 | InterPro | 121 | ||
| UniProtKB:A0AC58HNM2 | InterPro | 121 | ||
| UniProtKB:A0AC58HNM5 | InterPro | 158 |
- Genome Browsers
| Type | Name | Annotation Method | Has Havana Data | Length (nt) | Analysis |
|---|---|---|---|---|---|
| mRNA |
smndc1-201
(1)
|
Ensembl | 1,440 nt | ||
| mRNA |
smndc1-202
(1)
|
Ensembl | 2,152 nt |
Interactions and Pathways
No data available
Plasmids
No data available
- Genome Browsers