Gene

sned1

ID

ZDB-GENE-100913-1

Name

sushi, nidogen and EGF-like domains 1

Symbol

sned1 Nomenclature History

Previous Names

None

Type

protein_coding_gene

Location

Chr: 6 Mapping Details/Browsers

Description

Predicted to have Notch binding activity. Predicted to be involved in cell-matrix adhesion. Orthologous to human SNED1 (sushi, nidogen and EGF like domains 1).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

No data available

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With sned1 Human Ortholog

No data available

Associated With sned1 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR013032	EGF-like, conserved site
Conserved_site	IPR018097	EGF-like calcium-binding, conserved site
Domain	IPR000436	Sushi/SCR/CCP domain
Domain	IPR000742	EGF-like domain
Domain	IPR001881	EGF-like calcium-binding domain
Domain	IPR003886	NIDO domain
Domain	IPR003961	Fibronectin type III
Family	IPR050906	Notch signaling pathway
Homologous_superfamily	IPR013783	Immunoglobulin-like fold
Homologous_superfamily	IPR035976	Sushi/SCR/CCP superfamily
Homologous_superfamily	IPR036116	Fibronectin type III superfamily
PTM	IPR000152	EGF-type aspartate/asparagine hydroxylation site

Domain Details Per Protein

Protein	Length	EGF-like calcium-binding, conserved site	EGF-like calcium-binding domain	EGF-like, conserved site	EGF-like domain	EGF-type aspartate/asparagine hydroxylation site	Fibronectin type III	Fibronectin type III superfamily	Immunoglobulin-like fold	NIDO domain	Notch signaling pathway	Sushi/SCR/CCP domain	Sushi/SCR/CCP superfamily
UniProtKB:E7F2S5 InterPro	1374
UniProtKB:A0A8M3BAE4 InterPro	1173

Transcripts

Genome Browsers

NCBI

Ensembl

ZFIN

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	sned1-201 (1) Ensembl	Ensembl		5,442 nt	Select Tool ZFIN BLAST
mRNA	sned1-202 (1) Ensembl	Ensembl		4,017 nt	Select Tool ZFIN BLAST

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations