Gene

col28a1a

ID

ZDB-GENE-070705-84

Name

collagen, type XXVIII, alpha 1a

Symbol

col28a1a Nomenclature History

Previous Names

col28a1
si:ch211-174d12.1

Type

protein_coding_gene

Location

Chr: 19 Mapping Details/Browsers

Description

Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to extracellular matrix and extracellular space. Is expressed in intestine; liver; and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

4 figures from Gebauer et al., 2016

Cross-Species Comparison

High Throughput Data

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Sequence Targeting Reagents

Human Disease

Associated With col28a1a Human Ortholog

No data available

Associated With col28a1a Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Conserved_site	IPR020901	Proteinase inhibitor I2, Kunitz, conserved site
Domain	IPR002035	von Willebrand factor, type A
Domain	IPR002223	Pancreatic trypsin inhibitor Kunitz domain
Family	IPR050149	Collagen superfamily
Homologous_superfamily	IPR036465	von Willebrand factor A-like domain superfamily
Homologous_superfamily	IPR036880	Pancreatic trypsin inhibitor Kunitz domain superfamily
Repeat	IPR008160	Collagen triple helix repeat

Domain Details Per Protein

Protein	Length	Collagen superfamily	Collagen triple helix repeat	Pancreatic trypsin inhibitor Kunitz domain	Pancreatic trypsin inhibitor Kunitz domain superfamily	Proteinase inhibitor I2, Kunitz, conserved site	von Willebrand factor A-like domain superfamily	von Willebrand factor, type A
UniProtKB:C0H5W1 InterPro	1170

Transcripts

Genome Browsers

Type	Name	Annotation Method	Length (nt)	Analysis
mRNA	col28a1a-201 (1) Ensembl	Ensembl	5,252 nt	Select Tool ZFIN BLAST
mRNA	col28a1a-202 (1) Ensembl	Ensembl	936 nt	Select Tool
mRNA	col28a1a-203 (1) Ensembl	Ensembl	730 nt	Select Tool
mRNA	col28a1a-204 (1) Ensembl	Ensembl	940 nt	Select Tool

Interactions and Pathways

No data available

Antibodies

Name	Type	Antigen Genes	Isotype	Host Organism	Assay	Source	Citations
Ab1-col28a1a		col28a1a		Rabbit	IHC WB		1

Plasmids

No data available

Constructs

Marker Relationships

Sequences

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Citations