ZFIN ID: ZDB-GENE-070705-84
Gene Name: collagen, type XXVIII, alpha 1a
Gene Symbol: col28a1a    Nomenclature History

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Previous Names: col28a1, si:ch211-174d12.1

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(Including Attributions)
Gene Type: protein_coding_gene
Location: Chr: 19 Mapping Details/Browsers
Description: Predicted to have extracellular matrix structural constituent. Predicted to be involved in extracellular matrix organization. Predicted to localize to extracellular matrix and extracellular space. Is expressed in intestine; liver; and muscle. Orthologous to human COL28A1 (collagen type XXVIII alpha 1 chain).
Genome Resources: Alliance (1),  Gene:555428 (1),  Ensembl(GRCz11):ENSDARG00000077084 (1)
MUTATIONS AND SEQUENCE TARGETING REAGENTS
Allele Type Localization Consequence Mutagen Suppliers
sa5797 Point Mutation Unknown Premature Stop ENU
sa17603 Point Mutation Unknown Premature Stop ENU
  • European Zebrafish Resource Center (EZRC) (order this)
  • Zebrafish International Resource Center (ZIRC) (order this)
  • sa29212 Point Mutation Unknown Premature Stop ENU
    PHENOTYPE No data available
    DISEASE ASSOCIATED WITH col28a1a HUMAN ORTHOLOG No data available
    DISEASE ASSOCIATED WITH col28a1a VIA EXPERIMENTAL MODELS No data available
    GENE ONTOLOGY
    Ontology GO Term
    Biological Process extracellular matrix organization (more)
    Cellular Component collagen trimer (more)
    Molecular Function serine-type endopeptidase inhibitor activity (more)
    GO Terms (all 6)
    PROTEIN FAMILIES, DOMAINS AND SITES No links to external sites available
    TRANSCRIPTS
    Type Name Length (nt) Analysis
    mRNA col28a1a-202 (1)    Ensembl 936
    col28a1a-203 (1)    Ensembl 730
    col28a1a-204 (1)    Ensembl 940
    Browsers: UCSCNCBIEnsemblZFIN
    INTERACTIONS AND PATHWAYS
    ANTIBODIES
    Name Type Isotype Host Organism Assay Source Publications
    Ab1-col28a1a Rabbit IHC, WB 1
    PLASMIDS No data available
    CONSTRUCTS WITH SEQUENCES FROM col28a1a No data available
    MARKER RELATIONSHIPS
    col28a1a Contained in: [BAC] CH211-174D12 (1)
    SEQUENCE INFORMATION
    Type Accession # Length (nt/aa) Analysis
    RNA RefSeq:NM_001348047 (1)
    Genomic GenBank:CR318650 (1) 39122 nt
    Select Tool
    Polypeptide UniProtKB:C0H5W1 (1) 1170 aa
    Sequence Information (all 15)
    ORTHOLOGY for col28a1a ( Chr: 19 )
    CITATIONS (18)