Gene

ccdc137

ID

ZDB-GENE-060929-1206

Name

coiled-coil domain containing 137

Symbol

ccdc137 Nomenclature History

Previous Names

fb79h11
id:ibd1138
wu:fb79h11
zgc:153477

Type

protein_coding_gene

Location

Chr: 3 Mapping Details/Browsers

Description

Predicted to be active in nucleus. Is expressed in immature eye; optic tectum; and paraxial mesoderm. Orthologous to human CCDC137 (coiled-coil domain containing 137).

Genome Resources

Note

None

Comparative Information

Expression

All Expression Data

2 figures from Kudoh et al., 2001

Cross-Species Comparison

High Throughput Data

GEO (1)

Expression Atlas

UO scRNA-seq (UCSC browser)

Single Cell Expression Atlas

Daniocell

Thisse Expression Data

No data available

Wild Type Expression Summary

Phenotype

All Phenotype Data: No data available
Cross-Species Comparison: Alliance

Phenotype Summary

Mutations

Mutants

Allele	Type	Localization	Consequence	Mutagen	Supplier
sa12437	Allele with one point mutation	Unknown	Premature Stop	ENU	European Zebrafish Resource Center (EZRC) (order this) Zebrafish International Resource Center (ZIRC) (order this)
sa33100	Allele with one point mutation	Unknown	Splice Site	ENU	Zebrafish International Resource Center (ZIRC) (order this) European Zebrafish Resource Center (EZRC) (order this)

1 - 2 of 2

Show

Sequence Targeting Reagents

No data available

Human Disease

Associated With ccdc137 Human Ortholog

No data available

Associated With ccdc137 Via Experimental Models

No data available

Gene Ontology

Protein Domains

Domain, Family, and Site Summary

Type	InterPro ID	Name
Family	IPR026680	Coiled-coil domain-containing protein 137

1 - 1 of 1

Domain Details Per Protein

Protein	Length	Coiled-coil domain-containing protein 137
UniProtKB:Q08C68 InterPro	242

1 - 1 of 1

Transcripts

Genome Browsers

Genome Build: GRCz11Chromosome: 3

Type	Name	Annotation Method	Has Havana Data	Length (nt)	Analysis
mRNA	ccdc137-201 (1) Ensembl	Ensembl		1,833 nt	Select Tool ZFIN BLAST

1 - 1 of 1

Interactions and Pathways

No data available

Antibodies

No data available

Plasmids

No data available

Constructs

No data available

Marker Relationships

Relationship	Marker Type	Marker	Accession Numbers	Citations
Contained in	BAC	CH211-8C17	BX511176	ZFIN Curated Data
Encodes	EST	fb79h11	AI558496 AI558743
Encodes	EST	ibd1138	BG985466
Encodes	cDNA	MGC:153477	BC124364	ZFIN Curated Data

1 - 4 of 4

Show

Sequences

Type	Accession #	Length (nt/aa)	Analysis
RNA	RefSeq:NM_001076756 (1)	1818 nt	Select Tool ZFIN BLAST NCBI BLAST Ensembl UCSC BLAT
Genomic	GenBank:BX511176 (1)	116813 nt	Select Tool MegaBLAST Ensembl
Polypeptide	UniProtKB:Q08C68 (1)	242 aa	Select Tool ZFIN BLAST SIB BLAST Ensembl Protein Blast

Orthology

Comparative Orthology: Alliance
Gene Tree: Ensembl

Species	Symbol	Chromosome	Accession #	Evidence
Human	CCDC137	17	Ensembl:ENSG00000185298 Gene:339230 OMIM:614271 HGNC:33451	Amino acid sequence comparison (1)
Mouse	Ccdc137	11	Ensembl:ENSMUSG00000049957 MGI:1914541 Gene:67291	Amino acid sequence comparison (1)

Citations

Include unpublished citations

Strausberg,R.L., Feingold,E.A., Grouse,L.H., Derge,J.G., Klausner,R.D., Collins,F.S., Wagner,L., Shenmen,C.M., Schuler,G.D., Altschul,S.F., Zeeberg,B., Buetow,K.H., Schaefer,C.F., Bhat,N.K., Hopkins,R.F., Jordan,H., Moore,T., Max,S.I., Wang,J., Hsieh,F., Diatchenko,L., Marusina,K., Farmer,A.A., Rubin,G.M., Hong,L., Stapleton,M., Soares,M.B., Bonaldo,M.F., Casavant,T.L., Scheetz,T.E., Brownstein,M.J., Usdin,T.B., Toshiyuki,S., Carninci,P., Prange,C., Raha,S.S., Loquellano,N.A., Peters,G.J., Abramson,R.D., Mullahy,S.J., Bosak,S.A., McEwan,P.J., McKernan,K.J., Malek,J.A., Gunaratne,P.H., Richards,S., Worley,K.C., Hale,S., Garcia,A.M., Gay,L.J., Hulyk,S.W., Villalon,D.K., Muzny,D.M., Sodergren,E.J., Lu,X., Gibbs,R.A., Fahey,J., Helton,E., Ketteman,M., Madan,A., Rodrigues,S., Sanchez,A., Whiting,M., Madan,A., Young,A.C., Shevchenko,Y., Bouffard,G.G., Blakesley,R.W., Touchman,J.W., Green,E.D., Dickson,M.C., Rodriguez,A.C., Grimwood,J., Schmutz,J., Myers,R.M., Butterfield,Y.S., Krzywinski,M.I., Skalska,U., Smailus,D.E., Schnerch,A., Schein,J.E., Jones,S.J., and Marra,M.A. (2002) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Proceedings of the National Academy of Sciences of the United States of America. 99(26):16899-903

1 - 1 of 1

Show