Research
General Information
ZIRC
ZFIN ID: ZDB-GENE-050714-2
Gene Name: cytochrome P450, family 26, subfamily C, polypeptide 1
Gene Symbol: cyp26c1
Previous Names: cyp26b1l, cyp26d1 (1)
Location: Chr: 17   Details
Nomenclature History
GENE EXPRESSION
All Expression Data: 15 figures from 11 publications
Wild-type Stages, Structures: Blastula:Sphere (4.0h-4.33h) to Adult (90d-730d, breeding adult)
  blastoderm, brain, caudal fin, deep blastomere (all 36) expand
Curated Microarray Expression: GEO (1)
MUTANTS AND TARGETED KNOCKDOWNS
Mutant lines: 2 genotypes
Alleles: tpl24Gt
Knockdown reagents: MO1-cyp26c1 (1), MO2-cyp26c1 (1), MO3-cyp26c1 (1), MO4-cyp26c1 (1)
PHENOTYPE
Phenotype of Human Orthologue OMIM Phenotype ID
Focal facial dermal dysplasia 4 614974
GENE ONTOLOGY
Ontology GO Term
Biological Process retinoic acid metabolic process (more)
Molecular Function heme binding (more)
GO Terms (all 10)
PROTEIN FAMILIES, DOMAINS AND SITES
  • InterPro:IPR001128 (1)
  • InterPro:IPR002401 (1)
  • InterPro:IPR002403 (1)
  • InterPro:IPR017972 (1)
  • PROSITE:PS00086 (1)
  • Pfam:PF00067 (1)
  • TRANSCRIPTS
    Type Name Length (bp) Analysis
    mRNA cyp26c1-001 (1) 4032
    antisense ottdart00000055385 (1) 497
    GENE PRODUCT DESCRIPTION
    ANTIBODIES No data available
    CONSTRUCTS WITH SEQUENCES FROM cyp26c1 No data available
    SEGMENT (CLONE AND PROBE) RELATIONSHIPS
    cyp26c1 Contained in: [BAC] DKEY-71B20 (1)
    cyp26c1 Encodes: [cDNA] MGC:158120 (1) (order this)
    SEQUENCE INFORMATION
    Type Accession # Length (bp/aa) Analysis
    RNA RefSeq:NM_001029951 (1) 4034 bp
    Genomic GenBank:CU571091 (1) 75771 bp
    Select Tool
    Polypeptide UniProtKB:A1L1M2 (1) 554 aa
    Sequence Clusters UniGene:46344 (1)
    Sequence Information (all 14)
    OTHER cyp26c1 GENE PAGES
  • Gene:554036 (1)
  • VEGA:OTTDARG00000035081 (1)
  • VEGA:OTTDARG00000038637 (1)
  • Ensembl(Zv9):ENSDARG00000056029 (1)
  • ORTHOLOGY
      Evidence
    Species Symbol Chr (Position) Accession # AA CL
    Zebrafish cyp26c1 17  
    Human CYP26C1 10 (10q23.33)
  • OMIM:608428
  • Gene:340665
  • Mouse Cyp26c1 19 ( 32.36 cM)
  • MGI:2679699
  • Gene:546726
  • Orthology Details
    CITATIONS (35)